PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU03402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 19096.7 Da PI: 9.0263 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.5 | 1.5e-17 | 2 | 42 | 4 | 44 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +n+ n + tfskRr g++KK +ELS+LC++e+a ++fs++ PHU03402.1 2 KNQNNISATFSKRRDGLFKKVSELSTLCGVEIATVVFSPSK 42 7999**********************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MKNQNNISAT FSKRRDGLFK KVSELSTLCG VEIATVVFSP SKTSVYSIGH PCVLSVVDKF 60 LNPPPDTDSP QPLAKPYQNK DVTKMEKLIE AEEKRALRLQ STNTKGSYEG LNYFQLQELS 120 DILEAKLKMT ERVEIQQKES GIPFSFKSYG YALAPRENIL STSDVGPSRS N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-23 | M-type_MADS family protein |