PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU03270.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 860aa    MW: 97562.9 Da    PI: 5.7589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU03270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS147.51.2e-455357501218
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfsh 95 
                 lv+lLl++Ae v++++++la++ +ar    as +g+p+qRl +yf eAL++r+ +   e+ ++ + +++ +        ++  al+  +   P+ ++ +
  PHU03270.1 535 LVHLLLAAAEEVDQQQFHLASQSIARCLWKASAKGNPIQRLFFYFGEALQERIDQ---EIGRSPSFERKLRFLstlaLGTTPEALT-CHTEIPFSQVMQ 629
                 68****************************************************9...3333322222221111111333333333.55667******* PP

        GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 ++  qaI e ++g++++H +Df+i  G+Q   L+qaLa +R+++   l+iT++g+   ++ke++eetg+rL++fA++l++pf+f ++ +++++dl+ e+
  PHU03270.1 630 FAGIQAIFENIKGATKIHLVDFNIRSGIQCTGLMQALAeQRDRPIELLKITAIGH---QEKEKIEETGKRLQSFANSLNLPFSFAMVFMSDMKDLRAES 725
                 **************************************66668888*********...579************************************** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesv 218
                  +vk++E +aV ++  l ++  ++ 
  PHU03270.1 726 VNVKEHEIVAVYCSTVLRTMICRQD 750
                 ***************9999875544 PP
2GRAS291.3e-09787853289355
        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                  +g+ i+n+v++egaer+ r+ +l++Wr+ + ++ + ++++se+   qakl+l++++ +    + +++
  PHU03270.1 787 HIGEGIRNMVTAEGAERFTRNVKLHEWRAYIARFRMVEMEVSESSRYQAKLILEQFShGS-SCIVQND 853
                 58999***************************************************9333.4444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    
MDSSSELYQQ EEKKVISVCE YVANMLRESF QCLTVILLSL LLPLSFIVLA RLSVTQYLIA  60
MSSYTGPDTL LVRLYLYANP TLLHLLAPFV SISALSQCLT GRTLSDHMIT KPLVSASWFL  120
LFAFQICVCI GVEGSIAVGI DGTGFSRERL CLLTRSLFFL GLHETTLFWS KKVVKPVVDD  180
TVFGDGTEDR YVEKVAMAMS FGVLWWCKLR DEVESLVVVV EVKRDLIGNV DLVDFVGWWL  240
YYVTVAIGMV KVVKALVWLN FVLFCRNVVD SDLSCADSSL FMPHHPCRIL QKYSTFGESD  300
THPLTFLKNS SNIDSDNAGC CTRNDNKHFV SPGVQIMDSH EHLQECGRNE LINNSVIDPW  360
YELDSGDLES LYTVFDDKHH ENTSDKQFQL LEDQQQHISD NWTQSDDSSN MVLPLQPNQI  420
QATPEACNVV QPQLPRLGDF HDEKTNSISL ASLELLNNCG RLFKKSSEEN LSNVLSSEAR  480
VSNIPKLSTE EILRIAGERY IQYSTHRVDG LSMFIHPYAS SLTGLSIEQT KDMELVHLLL  540
AAAEEVDQQQ FHLASQSIAR CLWKASAKGN PIQRLFFYFG EALQERIDQE IGRSPSFERK  600
LRFLSTLALG TTPEALTCHT EIPFSQVMQF AGIQAIFENI KGATKIHLVD FNIRSGIQCT  660
GLMQALAEQR DRPIELLKIT AIGHQEKEKI EETGKRLQSF ANSLNLPFSF AMVFMSDMKD  720
LRAESVNVKE HEIVAVYCST VLRTMICRQD YLDNTMRRHF SFIVFFLIAL RTAWIETIWS  780
ERGLKYHIGE GIRNMVTAEG AERFTRNVKL HEWRAYIARF RMVEMEVSES SRYQAKLILE  840
QFSHGSSCIV QNDGKALQVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.17e-21GRAS family protein