PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03168.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 626aa MW: 70035.4 Da PI: 4.4678

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.2	1.4e-15	45	83	7	45
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 snr +s+R++g+lKKA+E+SvLCd+++ + +fs++gk PHU03168.1 45 SNRIGVYSRRKKGLLKKANEMSVLCDIDIFLAMFSPSGK 83 788889*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MTTNHNSVVY IPKSSDVIGI KELNLCLWKC RMGRAKMKLH KLDGSNRIGV YSRRKKGLLK 60 KANEMSVLCD IDIFLAMFSP SGKPSLYKSD SSTFEDMITK IAEVNPEERA KRKMECLEVS 120 AAFLIIGMSC FHSFLHSKFK LKKCLELTVL DEMVTYFNMV SKEANILGSR LWKNLDKIDN 180 IQQLRKLEDS ISKSLNEITK HKYGMGSLFF CAGEDIQPSS VQHSMDLPLN FDSRKEPNPC 240 SSIHGCDSEN MDAYKDPSSF DSSLLNNTGQ DFQASSLMQN GMNAWQDLYQ CSSIHGGNNE 300 NVDVYEHLNS FPIGYLEEPT FSFESYTNLV CNKEIEVSKP ASEKFVPDEM FLDCGLNQED 360 IETEFGFTFD VPQVELMDDL GNIFDCSTNN GSRLPQSDFA NIHDSSKSTS GTSDNMMLAD 420 PLNFLYGMDS LSSDAGEEFS TYSSTKHGIN SLSTPLNVGL SVHDGDSENM DGYGGLNVFH 480 SSSKFDGEQE FQSSLSIQYG MNSPVRFDAG KERHQSSSVQ GGDSESSNGY EDLNSFVQGF 540 LKDPSLSFES YADLTCNHEI EKFKPGCENY SADKMFLDCP INQEDLEIAF RSTLDLPLVE 600 KMDVQESTFD CLNKGFELPQ LSSIIV

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MTTNHNSVVY IPKSSDVIGI KELNLCLWKC RMGRAKMKLH KLDGSNRIGV YSRRKKGLLK  60
KANEMSVLCD IDIFLAMFSP SGKPSLYKSD SSTFEDMITK IAEVNPEERA KRKMECLEVS  120
AAFLIIGMSC FHSFLHSKFK LKKCLELTVL DEMVTYFNMV SKEANILGSR LWKNLDKIDN  180
IQQLRKLEDS ISKSLNEITK HKYGMGSLFF CAGEDIQPSS VQHSMDLPLN FDSRKEPNPC  240
SSIHGCDSEN MDAYKDPSSF DSSLLNNTGQ DFQASSLMQN GMNAWQDLYQ CSSIHGGNNE  300
NVDVYEHLNS FPIGYLEEPT FSFESYTNLV CNKEIEVSKP ASEKFVPDEM FLDCGLNQED  360
IETEFGFTFD VPQVELMDDL GNIFDCSTNN GSRLPQSDFA NIHDSSKSTS GTSDNMMLAD  420
PLNFLYGMDS LSSDAGEEFS TYSSTKHGIN SLSTPLNVGL SVHDGDSENM DGYGGLNVFH  480
SSSKFDGEQE FQSSLSIQYG MNSPVRFDAG KERHQSSSVQ GGDSESSNGY EDLNSFVQGF  540
LKDPSLSFES YADLTCNHEI EKFKPGCENY SADKMFLDCP INQEDLEIAF RSTLDLPLVE  600
KMDVQESTFD CLNKGFELPQ LSSIIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	9e-30	M-type_MADS family protein