PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU02995.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 241aa MW: 27570.3 Da PI: 8.8423

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU02995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.9	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s PHU02995.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	94.9	1.3e-31	85	175	10	100
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ea + s+qqe+ kLk ++e Lqr+qR+llGedL++L+ k+L++Le+qL+ slk+iRs++++l+l+q+ +lq+ke++l+e+n++L+++l+e PHU02995.1 85 REALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNGKDLESLERQLDMSLKQIRSTRTQLMLDQLTDLQRKEHALNEANRTLKQRLME 175 45556689*******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPET NISTREALEI SSQQEYLKLK GRYEALQRSQ RNLLGEDLGP 120 LNGKDLESLE RQLDMSLKQI RSTRTQLMLD QLTDLQRKEH ALNEANRTLK QRLMEGSQLN 180 LQWQPNAQDV DYGRQTTQTH GDGFFHPLEC EPTLQIGYQN DPITVGGAGP SVNNYMAGWL 240 P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-119	MIKC_MADS family protein