PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU02341.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 291aa    MW: 32210.4 Da    PI: 9.3858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU02341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.31.9e-11201226227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC ++ rtG C yG++C+FaHgp
  PHU02341.1 201 KTRLCYRWERTGRCCYGSSCQFAHGP 226
                 9***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MSRLVNNLQI SSKHEEYKKG QPNTLKELSL CKGSEKGANQ KGLLCYSDKR CGFNSDADEC  60
ASLNLKKPRA KNSRMAQEGS KSNVPKCNQF TRWGSCALGE KCRYVHATGG GGNAYGLLPS  120
QAIGVEQAGN LGKMLVCRYF AGGNGCPYGH ECQFFHEGGE RRESAAITIV TNDGGNEGRK  180
RTQSEMKEYR DSAEFLRKKL KTRLCYRWER TGRCCYGSSC QFAHGPAELQ GVGASNPQPL  240
GSIVGVSAPT KKVTSNEFVR PYQKKFPFDW DNVHKTAEVY GDWIELPPRP K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179201RKRTQSEMKEYRDSAEFLRKKLK
2196202LRKKLKT
3197203RKKLKTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-15C3H family protein