PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU01736.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CAMTA

Protein Properties

Length: 445aa MW: 49863.8 Da PI: 6.9132

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU01736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	87.9	1e-27	2	101	47	117
CG-1 47 vryfrkDGyswkkkkdgktvrEdhekLKvgg.............................vevlycyYahseenptfqrrcywlLeeelekivlvhyle 116 +r+fr+DG++ kkkkdgktv+E+he+LKv e +++yYah+e+ +tf rrcywlL+++le++vlvhy+e PHU01736.1 2 LRNFRRDGHNRKKKKDGKTVKEAHEHLKVSVsvcsrifneandhsnplvvkfgivlkvgnEERIHVYYAHGEDSSTFVRRCYWLLDKTLEHVVLVHYRE 100 79**************************99***************************************************************98 PP CG-1 117 v 117 + PHU01736.1 101 T 101 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MLRNFRRDGH NRKKKKDGKT VKEAHEHLKV SVSVCSRIFN EANDHSNPLV VKFGIVLKVG 60 NEERIHVYYA HGEDSSTFVR RCYWLLDKTL EHVVLVHYRE TIELSTMFTV QSQGFSNNKA 120 APVSSGSALS GPADMSASWD LSGQPDSAVD RQYSVSQHAH LEPNSDMTVQ NHEQRLLEIN 180 TLEWDDLLAP GDSNKIISTQ QGICMMLLLL GVSSSLERMS TVNNGNEISF HTADGQMTSS 240 FQENESGVMT IFVIRHFHGG QSHLDSSSLC CVCGDACFPA EILQPVVYRC VVSPQTPGLV 300 NIYLSFNGNK PISQIMSFEF RAPSVHLSTE PPENKSNWDE LALQMRLAHL LFSTSKSLNI 360 LSSKIHQELL KDAKTFAGKC SHIIDNWACL IKSIEDKKLS VACAKDRLFV CEPVYRNGLW 420 KELLKDVKSQ NMTSEVKELF ICVLS

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MLRNFRRDGH NRKKKKDGKT VKEAHEHLKV SVSVCSRIFN EANDHSNPLV VKFGIVLKVG  60
NEERIHVYYA HGEDSSTFVR RCYWLLDKTL EHVVLVHYRE TIELSTMFTV QSQGFSNNKA  120
APVSSGSALS GPADMSASWD LSGQPDSAVD RQYSVSQHAH LEPNSDMTVQ NHEQRLLEIN  180
TLEWDDLLAP GDSNKIISTQ QGICMMLLLL GVSSSLERMS TVNNGNEISF HTADGQMTSS  240
FQENESGVMT IFVIRHFHGG QSHLDSSSLC CVCGDACFPA EILQPVVYRC VVSPQTPGLV  300
NIYLSFNGNK PISQIMSFEF RAPSVHLSTE PPENKSNWDE LALQMRLAHL LFSTSKSLNI  360
LSSKIHQELL KDAKTFAGKC SHIIDNWACL IKSIEDKKLS VACAKDRLFV CEPVYRNGLW  420
KELLKDVKSQ NMTSEVKELF ICVLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	17	RKKKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	4e-47	CAMTA family protein