PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU00956.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 831aa    MW: 92589.5 Da    PI: 6.7189
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU00956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22132233199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++ ++W +++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  PHU00956.1 132 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHTNEWCFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 227
                 99*****************************7333.34459************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  PHU00956.1 228 VGVRRA 233
                 ***996 PP
2Auxin_resp119.23.3e-39258340183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s++eF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt++g+++++p +Wp+SkWr+Lk
  PHU00956.1 258 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIIGIEKAEPKSWPESKWRCLK 340
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    
MCSEMATSDS GRSATGAGKV DAEKALYAEL WRACAGPLVT VPRERELVFY FPQGHIEQVE  60
ASTNQASDQQ MPVYNLPSKI LCRVMNVLLK AETDTDEVYA QVTLMPEPNQ DENAVMKEPM  120
PSPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHTN  180
EWCFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNS  240
PSSVISSHSM HLGVLATAWH AIQTKTMFTV YYKPRTSPAE FIVPYDQYME SLKNNYSIGM  300
RFKMRFEGEE APEQRFTGTI IGIEKAEPKS WPESKWRCLK VRWDDTTAIP RPDRVSPWKV  360
EPALSPPALN PLPIPRQKRP RSNVLPSSPD SSVLTREGSS KVTVDPSQAS GFSRVLQGQE  420
ISTLRGNFVE NNESDSSEKP IVWTPLLDDE KADSASRICL SDKWLPLGRP ESSFTDLLSG  480
FGVQANSSHG FLLPTGGHTT SSSLVKQQTL DKESDFSLMG KQWSLVSSGL SLNLMDSRLK  540
GVDTLCQMGG TSRCNGFNEH PALPGHRIDN HQGNWLTPQS ALPYIQMSIH SREMMPKPIT  600
SLQPEAMKPK EGNCKLFGIP LVSKSASIGP VMLQKNSPTD SVSNMHFGVH PHQFPVTESD  660
QRSAQLTGSK LLDDGIALND QEEQFQISHP GTRDREGRGL VNSTRSCTKV HKQGMALGRS  720
VDLAKFNNYE ELIAELDHLF DFNGELKSRN KNWLVIYTDH EGDMMLVGDD PWQEFCGMVR  780
KIFIYTKDEV QQMNPGTLNS KGEDNSSVAE GYDAKAVKNL QLPSDSSPED S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein