PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU00880.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 781aa    MW: 86300 Da    PI: 7.2835
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU00880.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.1e-191472357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  PHU00880.1 14 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 72
                5679*****************************************************97 PP
2START172.13.6e-541583652204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+ + ++  g+++l +++l
  PHU00880.1 158 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGTIELLYMQL 255
                 789*******************************************************.8888888888****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  + ++++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++ +s v +v+h++l++++++++lr+l++s+++ ++
  PHU00880.1 256 YAPTTLAPpRDFWLLRYTTVMDDDSFVVCERSLRNTQNGPSmppVQNFVRAEILPSGYLIRPCEGSGSIVRIVDHMNLEAWSVPEVLRPLYESSAVLAQ 354
                 ***************************************9988899***************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 kt++a+l++++
  PHU00880.1 355 KTTMAALRQLR 365
                 *******9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    
MSCKDGRSVE DNGKYVRYTP EQVEALERLY HECPKPSSMR RQQLIRECPI LSHIEPRQIK  60
VWFQNRRCRE KQRKESSRLQ GVNRKLSAMN KLLVEENDRL QKQVSQLVYE NGYFRKQTQT  120
TKLASKDSSC ESVVTSAQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIIAISHGCT GMAARACGLV GLDPTRVAEI LKDRPSWYRD CRAVEVLNML  240
PTANGGTIEL LYMQLYAPTT LAPPRDFWLL RYTTVMDDDS FVVCERSLRN TQNGPSMPPV  300
QNFVRAEILP SGYLIRPCEG SGSIVRIVDH MNLEAWSVPE VLRPLYESSA VLAQKTTMAA  360
LRQLRQLTLE FLQPNVTNWG RRPAALRALS KRLSRGFNEA LNGFSSEGWS MQDNDGIDDV  420
AILVNSSPDK RMGLNLSFSD GFTSISNAVL CAKACMLLQS VTPAVLLRFL REHRSEWVDN  480
NIDAYSAAAV KVGPCSLPGA RVANFGGQVI LPLAHTVEHE EASLLEVIKL EGVCHSPEDV  540
ITPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL ETGPVGSEVA NDLKATGGTS KSIMTMAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSHFGFL GGLRLPLGTP EAHTLARWIC QSCRRFLAVE LPKLSSEGSE  720
SILDNLWHHS DAIICCSAKV CFLRLSCSAV SHACVNRFFS KISRVLVLPM SNLCDVNWDP  780
I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein