PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU00188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24396.7 Da PI: 7.9649 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.3 | 5.5e-20 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie k qvtfskRr ++KKA+EL++LC++e+a+i+fs+ k++ + PHU00188.1 11 IEVKNYLQVTFSKRRSDLFKKASELCTLCGIEIAIIVFSPARKVFSF 57 6777778**********************************999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MGRQKIKIAN IEVKNYLQVT FSKRRSDLFK KASELCTLCG IEIAIIVFSP ARKVFSFGHA 60 NVESLIDRFL SRNNTNNNPI ANNSLQLVEA HRNANVCGLN FQLTQILGEV EIEKKRGESL 120 DQMRKSSQSQ CWWEAPISQL DLQEIEQLKD SMEALKKYVT NQASKFMVNE IANSSTFFGD 180 NGNGIFDNYD IKPPRTMPSS SDLHNHSLGF DSAALF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-54 | M-type_MADS family protein |