PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00187.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 480aa MW: 54084.2 Da PI: 8.9863

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.2	2.8e-20	276	325	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i+n+ nr+vtfskRr g++KKA+EL++L++ae+ +++ s ++++l+++ PHU00187.1 276 KPIDNQNNRHVTFSKRRLGLFKKASELCILTGAEIVILVQSlKRQRLFTF 325 68*************************************99567888888 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MCDSFLSWCV CPTEWDLPTL RTEVCPVFYR DLPTLSLNSG PHQQGRQRSG SKTILSRPGP 60 RDDKGAALRP YCHDPARGLR FAPPNRDSPT LSFAPPNGIC LYSGLRFAPP NRDSPTLSLN 120 SGPHRQGRHR SGVKKKKQEN SQIDVKTNRE FMSLGKPKTE ASLRKLKNGT PISNFSLVSR 180 QEHFSGNTLY STKAQFCDSG NIHDVLIRCS GESEGLKHPV LSVYIDKKMV TRVKRLQWNF 240 RGNQSIFVDG LLVDLMWDVH DWFFNPPSGR RKIAIKPIDN QNNRHVTFSK RRLGLFKKAS 300 ELCILTGAEI VILVQSLKRQ RLFTFGHPSA DAVIDCYVTG ISSSSLSSST TDEFNLQQNN 360 QYYSHMCKDL EAEKKKKENI EEEKLVNIDG NNNGGYWWNE PIDTKGIDEL EEFMVALENL 420 KKNVTIRVDQ LSGLNGSSSS NSTLKIARFG VEDQFLNQIA IDYCSSIVPY ELNNSGDGQF

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MCDSFLSWCV CPTEWDLPTL RTEVCPVFYR DLPTLSLNSG PHQQGRQRSG SKTILSRPGP  60
RDDKGAALRP YCHDPARGLR FAPPNRDSPT LSFAPPNGIC LYSGLRFAPP NRDSPTLSLN  120
SGPHRQGRHR SGVKKKKQEN SQIDVKTNRE FMSLGKPKTE ASLRKLKNGT PISNFSLVSR  180
QEHFSGNTLY STKAQFCDSG NIHDVLIRCS GESEGLKHPV LSVYIDKKMV TRVKRLQWNF  240
RGNQSIFVDG LLVDLMWDVH DWFFNPPSGR RKIAIKPIDN QNNRHVTFSK RRLGLFKKAS  300
ELCILTGAEI VILVQSLKRQ RLFTFGHPSA DAVIDCYVTG ISSSSLSSST TDEFNLQQNN  360
QYYSHMCKDL EAEKKKKENI EEEKLVNIDG NNNGGYWWNE PIDTKGIDEL EEFMVALENL  420
KKNVTIRVDQ LSGLNGSSSS NSTLKIARFG VEDQFLNQIA IDYCSSIVPY ELNNSGDGQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	7e-23	M-type_MADS family protein