PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00044.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 904aa MW: 99408 Da PI: 6.4612

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26.5	1.7e-08	464	536	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..............kr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++g ++ +e+Aa+a++ a++k++g PHU00044.1 464 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtrkgrqvfmfvylMYfhLNVYIGGYDKEEKAARAYDLAALKYWG 536 57*****************7666733577789999987763367***********************98 PP
2	AP2	46.2	1.1e-14	579	630	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PHU00044.1 579 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 630 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence
MSSMNNWLGF SLSPHEEVLT SQQSSHQECF DLMTSHHHHH HHHESTVVLP SLNVVPHDNT 60 PFGIFEAFNR NHHHQSQDWN TDDSNYKTTS EMSMLMGGSC NGQHLENNQE PPKLENFLGI 120 GEQKLQQVCS NNNNNTNNNG DYSIYCSPPS NIISENNANN IIGLSMIKNW LRNNPNTTNV 180 ATTTTNPSCQ DDKKDNGGVM VVVGGGGNAQ SLSLSMSTGG GGGENSCSSE NNKQEIVNGN 240 NGSIIDGQIS GAIEVVPKKS IDTFGQRTSI YRDWNTDDSN YKTTSEMSML MGGSCNGQHL 300 ENNQEPPKLE NFLGIGEQKL QQVCSNNNNN TNNNGDYSIY CSPPSNIISE NNANNIIGLS 360 MIKNWLRNNP NTTNVATTTT NPSCQDDKKD NGGVMVVVGG GGNAQSLSLS MSTGGGGGEN 420 SCSSENNKQE IVNGNNGSII DGQISGAIEV VPKKSIDTFG QRTSIYRGVT RHRWTGRYEA 480 HLWDNSCRRE GQTRKGRQVF MFVYLMYFHL NVYIGGYDKE EKAARAYDLA ALKYWGPTTT 540 TNFPISSYEK ELEEMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV 600 AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN RYDVKSILES STLPIGGAAK 660 RLKDVEQGEI ALDYQRASQE NIVNTHLITS GSVGSYGASH SWPNIALQQA QPLSAMHSYP 720 YSQPRVWCKQ EVQDSSDHLN VTSQSYQDFH PLQLGNGHNF MQTNSALHNL MGLDNSSMDH 780 NSVAYHQGVG YASNGGNNHG VGFVLPHLSS IIPHQESNHQ QSQANGYGEN EVKQLQLGNE 840 NLFGYYNSQQ STSNGSIKAG LYDHQESTCN NWMSTAVPVA LASRSNTMAV CHGAAPTFTV 900 WNDT

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence

MSSMNNWLGF SLSPHEEVLT SQQSSHQECF DLMTSHHHHH HHHESTVVLP SLNVVPHDNT  60
PFGIFEAFNR NHHHQSQDWN TDDSNYKTTS EMSMLMGGSC NGQHLENNQE PPKLENFLGI  120
GEQKLQQVCS NNNNNTNNNG DYSIYCSPPS NIISENNANN IIGLSMIKNW LRNNPNTTNV  180
ATTTTNPSCQ DDKKDNGGVM VVVGGGGNAQ SLSLSMSTGG GGGENSCSSE NNKQEIVNGN  240
NGSIIDGQIS GAIEVVPKKS IDTFGQRTSI YRDWNTDDSN YKTTSEMSML MGGSCNGQHL  300
ENNQEPPKLE NFLGIGEQKL QQVCSNNNNN TNNNGDYSIY CSPPSNIISE NNANNIIGLS  360
MIKNWLRNNP NTTNVATTTT NPSCQDDKKD NGGVMVVVGG GGNAQSLSLS MSTGGGGGEN  420
SCSSENNKQE IVNGNNGSII DGQISGAIEV VPKKSIDTFG QRTSIYRGVT RHRWTGRYEA  480
HLWDNSCRRE GQTRKGRQVF MFVYLMYFHL NVYIGGYDKE EKAARAYDLA ALKYWGPTTT  540
TNFPISSYEK ELEEMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV  600
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN RYDVKSILES STLPIGGAAK  660
RLKDVEQGEI ALDYQRASQE NIVNTHLITS GSVGSYGASH SWPNIALQQA QPLSAMHSYP  720
YSQPRVWCKQ EVQDSSDHLN VTSQSYQDFH PLQLGNGHNF MQTNSALHNL MGLDNSSMDH  780
NSVAYHQGVG YASNGGNNHG VGFVLPHLSS IIPHQESNHQ QSQANGYGEN EVKQLQLGNE  840
NLFGYYNSQQ STSNGSIKAG LYDHQESTCN NWMSTAVPVA LASRSNTMAV CHGAAPTFTV  900
WNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-123	AP2 family protein