PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99983.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 434aa MW: 47128.2 Da PI: 8.5048

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.5e-11	48	73	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p PHT99983.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73 6899********************97 PP
2	zf-CCCH	39.2	1.1e-12	94	118	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ PHT99983.1 94 QPECQYYLKTGTCKFGATCKFHHPK 118 799********************96 PP
3	zf-CCCH	37.8	3.3e-12	141	164	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ PHT99983.1 141 TECAYYMRTGQCKFGSTCKFHHPQ 164 58********************97 PP
4	zf-CCCH	37.9	3e-12	293	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ PHT99983.1 293 PGQPECQFYMKTGDCKFGAVCRFHHPR 319 5789*********************96 PP
5	zf-CCCH	40.2	5.8e-13	339	365	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ PHT99983.1 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSGESIES GHYPVREGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RAGQPECQYY LKTGTCKFGA TCKFHHPKDK 120 AGIAGRVNLN VLGYPLRANE TECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPT 180 VPSATTPGQL SYPLSRGSFI PGARWQGPSG YTPLIVPQGV VSVPGFAYGG QMGSVSSPEG 240 QQQAAGNNQV YGTSRSGDPA TMGSQGVTSP YRQASTPMGY YALQGENVFP ERPGQPECQF 300 YMKTGDCKFG AVCRFHHPRE RMIPPPDCLL SPIGLPLRPG EPLCIFYSRY GICKFGPSCK 360 FDHPMTVFTY SISGSSSTTD APTVQRLLGS SSGTSALNLT SEGLVEAVST KPRRLSLTET 420 RKMPSGDNNI DREG

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSGESIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RAGQPECQYY LKTGTCKFGA TCKFHHPKDK  120
AGIAGRVNLN VLGYPLRANE TECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPT  180
VPSATTPGQL SYPLSRGSFI PGARWQGPSG YTPLIVPQGV VSVPGFAYGG QMGSVSSPEG  240
QQQAAGNNQV YGTSRSGDPA TMGSQGVTSP YRQASTPMGY YALQGENVFP ERPGQPECQF  300
YMKTGDCKFG AVCRFHHPRE RMIPPPDCLL SPIGLPLRPG EPLCIFYSRY GICKFGPSCK  360
FDHPMTVFTY SISGSSSTTD APTVQRLLGS SSGTSALNLT SEGLVEAVST KPRRLSLTET  420
RKMPSGDNNI DREG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-180	C3H family protein