PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99517.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 404aa MW: 45768.4 Da PI: 6.3354

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.2	6.2e-25	294	377	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev+aL+ +r+ +++++ +g +k+ Weev++ +++ g+ r+pk+Ckekwen+nk+yk++ ++ k r +++ ++cpyf++l+ PHT99517.1 294 RWPKSEVQALVSVRTCLDHKFLKG-AKGSVWEEVADGLAKMGYIRTPKKCKEKWENINKYYKRTIDSGKTR-PKNYRSCPYFHELD 377 8********************9.99**************************************98.888899****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MEPPLTDGAV RSSNDVASFA VNLSPFPQST TNAVYQTSVI PPPEIGQLPV RKLRPVRSYV 60 DNMPCNNSNS DSDLGFMTQF SAQNALPKEC DNDVTLLPRE GGFVDSLAGN GVPCLGNRCS 120 EAKAEISAVQ QMKSEFHADC LNLISQARIL EAEFSSSSDD SESSEAIEEH LNRKRKRKTR 180 NSIKLYLEDV VRRLMDKQEQ MHKQLIEMIE KKEHERITRE EAWKQQEVER AKRDGELRAE 240 ETSRNLVLIS FLENLLGEEF QIPKSSEISS VVKDEGEFHG QEADARSSDP CNRRWPKSEV 300 QALVSVRTCL DHKFLKGAKG SVWEEVADGL AKMGYIRTPK KCKEKWENIN KYYKRTIDSG 360 KTRPKNYRSC PYFHELDTLY KNGLLNHGAG NCVKSETESK NTEE

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MEPPLTDGAV RSSNDVASFA VNLSPFPQST TNAVYQTSVI PPPEIGQLPV RKLRPVRSYV  60
DNMPCNNSNS DSDLGFMTQF SAQNALPKEC DNDVTLLPRE GGFVDSLAGN GVPCLGNRCS  120
EAKAEISAVQ QMKSEFHADC LNLISQARIL EAEFSSSSDD SESSEAIEEH LNRKRKRKTR  180
NSIKLYLEDV VRRLMDKQEQ MHKQLIEMIE KKEHERITRE EAWKQQEVER AKRDGELRAE  240
ETSRNLVLIS FLENLLGEEF QIPKSSEISS VVKDEGEFHG QEADARSSDP CNRRWPKSEV  300
QALVSVRTCL DHKFLKGAKG SVWEEVADGL AKMGYIRTPK KCKEKWENIN KYYKRTIDSG  360
KTRPKNYRSC PYFHELDTLY KNGLLNHGAG NCVKSETESK NTEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	178	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	4e-50	Trihelix family protein