PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98517.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

E2F/DP

Protein Properties

Length: 404aa MW: 45543.5 Da PI: 8.7228

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	74.6	1e-23	17	82	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l++++ +++ l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg PHT98517.1 17 RKQKSLGLLCSNFLSLYNREGVETIGLDDAARRL---GV--ERRRIYDIVNVLESIGVLARKAKNRYSWKG 82 79***************999********.....****************************98 PP
2	E2F_TDP	74.6	1e-23	151	231	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +++ ++++l+e+ak L+ + +++k+RR+YDi+NVL++++ iek ++k+++rw g PHT98517.1 151 RREKSLGLLTQNFVKLFLCTNVDMICLDEAAKILLGDgrppaMTRTKVRRLYDIANVLSSMKFIEKthhpeTRKPAFRWLG 231 689************************************99999*****************99999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MALSLDPSKD SRSTYCRKQK SLGLLCSNFL SLYNREGVET IGLDDAARRL GVERRRIYDI 60 VNVLESIGVL ARKAKNRYSW KGFGAIPRTL EQLKEEGLKD NGSGFDGSSS VKGSDDDDDD 120 RDSNLIDSSQ TDKLNPNSGV NSAGPFKSEN RREKSLGLLT QNFVKLFLCT NVDMICLDEA 180 AKILLGDGRP PAMTRTKVRR LYDIANVLSS MKFIEKTHHP ETRKPAFRWL GLRERSEDKS 240 VDALCANESK KRVFGSDLTN STIKRSRVGL PMDGISDEAT RIQLLTEVKC ENPETDFHIP 300 KQEPGLTTSK KSYHFGPFAP PTIPPAEVSQ SDRMKQVHNW ESLASNYHPQ YHNQGILSFI 360 FSTILNYHPP YHNQALKDLF AHYVEAWKSW YLEVAGKNPI QLIS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MALSLDPSKD SRSTYCRKQK SLGLLCSNFL SLYNREGVET IGLDDAARRL GVERRRIYDI  60
VNVLESIGVL ARKAKNRYSW KGFGAIPRTL EQLKEEGLKD NGSGFDGSSS VKGSDDDDDD  120
RDSNLIDSSQ TDKLNPNSGV NSAGPFKSEN RREKSLGLLT QNFVKLFLCT NVDMICLDEA  180
AKILLGDGRP PAMTRTKVRR LYDIANVLSS MKFIEKTHHP ETRKPAFRWL GLRERSEDKS  240
VDALCANESK KRVFGSDLTN STIKRSRVGL PMDGISDEAT RIQLLTEVKC ENPETDFHIP  300
KQEPGLTTSK KSYHFGPFAP PTIPPAEVSQ SDRMKQVHNW ESLASNYHPQ YHNQGILSFI  360
FSTILNYHPP YHNQALKDLF AHYVEAWKSW YLEVAGKNPI QLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-114	E2F/DP family protein