PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT98299.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 299aa    MW: 33721.4 Da    PI: 6.3918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT98299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.8e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ede+l+++  + G ++W+++ +  g++R++k+c++r ++yl
       PHT98299.1 16 KGPWTKDEDEKLIEYTYKNGHNNWRLVTKNAGLKRCGKSCRLRCNNYL 63
                     79********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MGRYPCCNYD YSDLKKGPWT KDEDEKLIEY TYKNGHNNWR LVTKNAGLKR CGKSCRLRCN  60
NYLKPGIKRG GFTKEEEQII INLHSSFGNN ANQDEGLIAW SSRIDGIECS LPNGYPSISS  120
SLKVHSETFN KIETIQSRSA CLMCNDEKHK SKNGPNSLEF CQANESNSSA NQVEGLNIAW  180
SSRIDSIECS LPNDYPSISN SSKVHPETFD KIETIQSRSV WLLCNADKHK SRNDPNSSKG  240
IQANELNSNH VEGLVPSTSK SSNLNKNCIS KFSELDDIDA WEIPQDDEAI SFFWNTIFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-36MYB family protein