PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98253.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 1066aa MW: 119883 Da PI: 6.2537

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.8	1.9e-11	101	151	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT++E+ l+ +v+++G+g W+tI + R+ ++k++w++ PHT98253.1 101 KQKWTPDEEAALKAGVHKYGPGKWRTILKDPEfskvlSSRSNVDLKDKWRN 151 79*********************************9**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1066 aa Download sequence
MSYYDQPPPV GVPPPQGYPP KDASYGYPPQ GYPPQGYPPQ GYPQQGYPQQ AQQGYPQQGY 60 PPPPYGAPQY AAPPPQKNSS GSTDILTGWI FFLNSWMGAP KQKWTPDEEA ALKAGVHKYG 120 PGKWRTILKD PEFSKVLSSR SNVDLKDKWR NMSVIANGWG SREKARLALK RMNQARKQDE 180 SSLAVITEAK SDEKMAEARL ATTSIGSPQI GGSKRSIIRL DNLIMEAISN LKESGGSNKT 240 SIATYIEDQY WAPPNFKRLL SAKLKYLTAT GRLTKVKRKY RIATIPVLSD KRRIPSIPLL 300 ESRQRISATV DQDDFKMLIK AQVDLELTKM RSMTPQEAAA AAAQAVAEAE VSMAEAEDAA 360 RKADAAEAYA EAAQALAEAA MKALKERSSP RIPTLLLACK YGKSGVCNSK GLPAMDGNLN 420 DNAFLRARIK ELERERDELH KDIEQLCMQQ AGPSYIGMPT RMPLHRIAGL EQEAESLKKK 480 LSACTRENQN LQEELSEAYN IKGQLADLHS AEVSKNIEAE KQLKFFQGCV AAAFSERDHA 540 VMEAEKAKEQ EELMSRGLHE LQQRIEELSC ELLEEKILTA TLQGDMDREE RLDEIFKEVV 600 HKFYEIRRQT LEDIEDVSWE DKCACLLHDS SEMWTFSNPG ETSTSNYISS LEEQVETLRK 660 SLDNLQYKLL VGLEIENHLK KKVRALEKQK ILSEEKLRAQ ISAFRHYHSQ HRVNITSFLD 720 EGFSHIKSAM NMVEEKLKDC SISERDLNSS QVDDLQFSEL ECQDVQIKNV DGSDLIFKRN 780 QPSLTTTITV GNSDASKALA VALNEKVETL LLLSQQEERH LLERNVNAAL QKKVEELQRN 840 LLQVTNEKVK ALMELAQLNR DYQVLHEKVN EASRQGKSLG EIAVKRTLQE KDGRLKNLLK 900 TSYLRRWTGI QDSDVNDADT HRDSEANFAD RRPTNNVDFA RMKIENATLK ESLESMEHLI 960 RAVRRLRLSL LKFKESAASE GMENCYSVSL DNIINEASQL KTALGSSLPL SWSAEADSGS 1020 VSKHVEEETD NGHSTRENMD FVSAAGFEMV ELLVFVAQLL KDYKCS

Sequence ? help Back to Top

Protein Sequence Length: 1066 aa Download sequence

MSYYDQPPPV GVPPPQGYPP KDASYGYPPQ GYPPQGYPPQ GYPQQGYPQQ AQQGYPQQGY  60
PPPPYGAPQY AAPPPQKNSS GSTDILTGWI FFLNSWMGAP KQKWTPDEEA ALKAGVHKYG  120
PGKWRTILKD PEFSKVLSSR SNVDLKDKWR NMSVIANGWG SREKARLALK RMNQARKQDE  180
SSLAVITEAK SDEKMAEARL ATTSIGSPQI GGSKRSIIRL DNLIMEAISN LKESGGSNKT  240
SIATYIEDQY WAPPNFKRLL SAKLKYLTAT GRLTKVKRKY RIATIPVLSD KRRIPSIPLL  300
ESRQRISATV DQDDFKMLIK AQVDLELTKM RSMTPQEAAA AAAQAVAEAE VSMAEAEDAA  360
RKADAAEAYA EAAQALAEAA MKALKERSSP RIPTLLLACK YGKSGVCNSK GLPAMDGNLN  420
DNAFLRARIK ELERERDELH KDIEQLCMQQ AGPSYIGMPT RMPLHRIAGL EQEAESLKKK  480
LSACTRENQN LQEELSEAYN IKGQLADLHS AEVSKNIEAE KQLKFFQGCV AAAFSERDHA  540
VMEAEKAKEQ EELMSRGLHE LQQRIEELSC ELLEEKILTA TLQGDMDREE RLDEIFKEVV  600
HKFYEIRRQT LEDIEDVSWE DKCACLLHDS SEMWTFSNPG ETSTSNYISS LEEQVETLRK  660
SLDNLQYKLL VGLEIENHLK KKVRALEKQK ILSEEKLRAQ ISAFRHYHSQ HRVNITSFLD  720
EGFSHIKSAM NMVEEKLKDC SISERDLNSS QVDDLQFSEL ECQDVQIKNV DGSDLIFKRN  780
QPSLTTTITV GNSDASKALA VALNEKVETL LLLSQQEERH LLERNVNAAL QKKVEELQRN  840
LLQVTNEKVK ALMELAQLNR DYQVLHEKVN EASRQGKSLG EIAVKRTLQE KDGRLKNLLK  900
TSYLRRWTGI QDSDVNDADT HRDSEANFAD RRPTNNVDFA RMKIENATLK ESLESMEHLI  960
RAVRRLRLSL LKFKESAASE GMENCYSVSL DNIINEASQL KTALGSSLPL SWSAEADSGS  1020
VSKHVEEETD NGHSTRENMD FVSAAGFEMV ELLVFVAQLL KDYKCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.1	8e-83	MYB_related family protein