PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT98197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 139aa MW: 15766.6 Da PI: 8.2088 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.9 | 4.8e-10 | 58 | 80 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f rtG+C+yGd+Ck+ H++ PHT98197.1 58 VCHHFVRTGYCQYGDSCKYYHPK 80 6********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence |
MPLGKYYCDY CDKEFQDTAA ARRRHLEGVQ HKRAKALWYD SLRNPQLFND PDSFGKGVCH 60 HFVRTGYCQY GDSCKYYHPK QNSQTVNQTG IPPGENSREG FHSSDIFREK AGASLGNLPP 120 SLRPPPEGGY PPLPFVDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 2e-30 | C3H family protein |