PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT98197.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 139aa    MW: 15766.6 Da    PI: 8.2088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT98197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.8e-105880527
                --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                 C++f rtG+C+yGd+Ck+ H++
  PHT98197.1 58 VCHHFVRTGYCQYGDSCKYYHPK 80
                6********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MPLGKYYCDY CDKEFQDTAA ARRRHLEGVQ HKRAKALWYD SLRNPQLFND PDSFGKGVCH  60
HFVRTGYCQY GDSCKYYHPK QNSQTVNQTG IPPGENSREG FHSSDIFREK AGASLGNLPP  120
SLRPPPEGGY PPLPFVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-30C3H family protein