PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97587.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 407aa MW: 45234.3 Da PI: 5.2747

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.3	6.3e-08	61	106	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ + C+ + lC++C +H+ H +vp+ PHT97587.1 61 VWVCEACECAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 106 689*****************************66899999877775 PP
2	CCT	67.8	2.9e-23	339	382	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++l+YkeK+k+RkFeK+irY+sRK++Ae+RpR+KGrF++++ PHT97587.1 339 REARVLKYKEKKKNRKFEKTIRYASRKVYAETRPRIKGRFARRT 382 9****************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MLKKEKSGGF DGSSNNWARM CDSCHFAACT VYCQADSAYL CGGCDARIHA AGLEASRHER 60 VWVCEACECA PAAFLCKADA ASLCASCDAD IHSANPLARR HHRVPIMPIP GTLYGPPAVD 120 IVGDDSMIIG EPRGDSTENY GFLRLTKDED DMTIDEEDED EAASWLLLNP PVTNNNKNNV 180 NNNINNQNNN CRMLFGGEVV DDYLDLAECG GDNQFNDQYS VNQQQQLYSV PQKSYGGDSV 240 VPVQDGQGKS LIIYHQQQQQ QSHHLNFQLG VEYDNSNTGY GYPASMSHSV SISSMDVSVV 300 PESALSENSN SHPRPPKESI DLYSGHPIQI PPHLAQMDRE ARVLKYKEKK KNRKFEKTIR 360 YASRKVYAET RPRIKGRFAR RTDIEAEVYQ MLSTQLMTDS SYGIVPS

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MLKKEKSGGF DGSSNNWARM CDSCHFAACT VYCQADSAYL CGGCDARIHA AGLEASRHER  60
VWVCEACECA PAAFLCKADA ASLCASCDAD IHSANPLARR HHRVPIMPIP GTLYGPPAVD  120
IVGDDSMIIG EPRGDSTENY GFLRLTKDED DMTIDEEDED EAASWLLLNP PVTNNNKNNV  180
NNNINNQNNN CRMLFGGEVV DDYLDLAECG GDNQFNDQYS VNQQQQLYSV PQKSYGGDSV  240
VPVQDGQGKS LIIYHQQQQQ QSHHLNFQLG VEYDNSNTGY GYPASMSHSV SISSMDVSVV  300
PESALSENSN SHPRPPKESI DLYSGHPIQI PPHLAQMDRE ARVLKYKEKK KNRKFEKTIR  360
YASRKVYAET RPRIKGRFAR RTDIEAEVYQ MLSTQLMTDS SYGIVPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	2e-78	CO-like family protein