PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97586.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 422aa MW: 46654.6 Da PI: 5.3889

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.6	2.2e-07	19	60	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+ +++ + +C ++ +lC C +H H++ PHT97586.1 19 RVCDSCHSAASTVYCWADSAYLCTGCDAGIHAAslvaslHKR 60 79****99*******************66788888876 PP
2	CCT	69.7	7.7e-24	342	385	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PHT97586.1 342 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 385 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MFKKENSGGF DGSSNNWARV CDSCHSAAST VYCWADSAYL CTGCDAGIHA ASLVASLHKR 60 VWVCEALEHA PAALLCKADA ASFCASCDAD IQSANPLAHL HHCVPIMPIP GTLSGPPAVD 120 TIGGGSMMIG GTTGECTEDD GFLSLTQDAD DTTIDEEDED EAPSWLLLNL PVKNNNKNNV 180 SNTNNNQNNN YGMLFGGEVV DDYLDLAEYG GDCQFNDQYS VNQQQQHYSA PPKSYGGDSV 240 VPVQDGQRKS LILYHQQQQQ QQQQSHHLNF QLGTEYDRFN TGYGYPASLS HSVSNSSVDV 300 SVVPESALSE TSNSHPRVPK KTMDHYSGPP IQIPPQLTPM DREARVLRYR EKKKNRKFEK 360 TIRYASRKAY AETRPRIKGR FAKRTDVEAE VDQMFSTQLM TDSSYRIVPS FRMQQREDNT 420 SP

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MFKKENSGGF DGSSNNWARV CDSCHSAAST VYCWADSAYL CTGCDAGIHA ASLVASLHKR  60
VWVCEALEHA PAALLCKADA ASFCASCDAD IQSANPLAHL HHCVPIMPIP GTLSGPPAVD  120
TIGGGSMMIG GTTGECTEDD GFLSLTQDAD DTTIDEEDED EAPSWLLLNL PVKNNNKNNV  180
SNTNNNQNNN YGMLFGGEVV DDYLDLAEYG GDCQFNDQYS VNQQQQHYSA PPKSYGGDSV  240
VPVQDGQRKS LILYHQQQQQ QQQQSHHLNF QLGTEYDRFN TGYGYPASLS HSVSNSSVDV  300
SVVPESALSE TSNSHPRVPK KTMDHYSGPP IQIPPQLTPM DREARVLRYR EKKKNRKFEK  360
TIRYASRKAY AETRPRIKGR FAKRTDVEAE VDQMFSTQLM TDSSYRIVPS FRMQQREDNT  420
SP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	8e-49	CO-like family protein