PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97585.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 404aa MW: 44556.4 Da PI: 5.422

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97585.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.7	3.7e-06	19	59	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+ +++ + +C+ ++ +lC+ C +H H+ PHT97585.1 19 RVCDSCHSAACTVYCRADSAYLCAGCDARIHAAsvvasrHE 59 79****99*******************6566666666 PP
2	zf-B_box	28.9	2.3e-09	61	106	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp+ PHT97585.1 61 VWVCEACERAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 106 689*****************************66899999877775 PP
3	CCT	68.4	1.9e-23	335	378	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re ++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PHT97585.1 335 RETRVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 378 99****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MLKKENSGGF DGSSNNWARV CDSCHSAACT VYCRADSAYL CAGCDARIHA ASVVASRHER 60 VWVCEACERA PAAFLCKADA ASLCASCDAD IHSANPLARR HHRVPIMPIP GTLYGPPAVD 120 TVGGGSMMIG GTTGEGTEDD GFLSLTQDAD DTTIDEEDED EAASWLLLNP PVKNNNKNNN 180 ENNYGMLFGE EVVDDYLDLA EYGGDNQFND KYSVNQQQLH YSVPQKSYGG DSVVPVQDGQ 240 RKSLILYHQQ QQQQQQKSHH LNFQLGMEYD NSNTGYGYPA SLSHSVSISS MDVSVVPESA 300 LSETSNSHPR PPKGTIDLFS GTPIQVPPQL TPTDRETRVL RYREKKKNRK FEKTIRYASR 360 KAYAETRPRI KGRFAKRTDV EAEVDQMFST QLMADTSYGI VPSF

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MLKKENSGGF DGSSNNWARV CDSCHSAACT VYCRADSAYL CAGCDARIHA ASVVASRHER  60
VWVCEACERA PAAFLCKADA ASLCASCDAD IHSANPLARR HHRVPIMPIP GTLYGPPAVD  120
TVGGGSMMIG GTTGEGTEDD GFLSLTQDAD DTTIDEEDED EAASWLLLNP PVKNNNKNNN  180
ENNYGMLFGE EVVDDYLDLA EYGGDNQFND KYSVNQQQLH YSVPQKSYGG DSVVPVQDGQ  240
RKSLILYHQQ QQQQQQKSHH LNFQLGMEYD NSNTGYGYPA SLSHSVSISS MDVSVVPESA  300
LSETSNSHPR PPKGTIDLFS GTPIQVPPQL TPTDRETRVL RYREKKKNRK FEKTIRYASR  360
KAYAETRPRI KGRFAKRTDV EAEVDQMFST QLMADTSYGI VPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	2e-95	CO-like family protein