PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT97243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26995.5 Da PI: 8.0783 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.8 | 1.6e-09 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri + ++r+v + kR++ + KKA+ L +LCd+e+ + f + PHT97243.1 10 RIVDPRKRKVLLDKRLESLYKKAKHLEILCDIEIGMFFFTP 50 788999****************************9888876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MTKMGVRPSR IVDPRKRKVL LDKRLESLYK KAKHLEILCD IEIGMFFFTP GDQNIFAWPS 60 LTQATDWVKN YIASFDKQRP IKMVKHEDFL QSVLNAKEGK INQLEKLVEK KEMEYNFNQL 120 VEARKRFDEL ENLTAIVARH GGIALRPLSH RGEVDKSASE MLFDGKVGTV MCMENPCEAM 180 RGALIDVREG TLKMRLDDEE LALRLQHLWV QLASPLPVVG LTLPVPPDFS VEVYQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 4e-15 | M-type_MADS family protein |