PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT97161.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24027.3 Da PI: 8.3807 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97 | 2e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg+++ ++++++q+++e+ PHT97161.1 2 SCNGCRILRKGCNENCILRQSLqgienPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTVNPVHGAVGLLWMGNWHVCQSAVET 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l PHT97161.1 101 VLK 103 765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MSCNGCRILR KGCNENCILR QSLQGIENPH AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWMGN WHVCQSAVET VLKGGVLRPL PEFSGVATSP 120 AEFYSASEAN DVDLFRSQSS NFKSKRKVMD EIAEDLDLGL SPRTMVAAGG KLSRRTEKRR 180 AATPSLNSDE SDTTTLESGF MYQQNPQQGN ETKLLRLFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-70 | LBD family protein |