PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP12318

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Dof

Protein Properties

Length: 262aa MW: 28535.9 Da PI: 6.1573

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP12318	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	94.7	6.7e-30	33	89	2	58
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG l n v + +n OMP12318 33 THQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLPNSNVAVTNNNN 89 57899****************************************987776655554 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MQDIHSIGGG RIFSGGGGGG SGDRRLRPHH HQTHQALKCP RCDSLNTKFC YYNNYNLSQP 60 RHFCKGCRRY WTKGGVLPNS NVAVTNNNNS SQNNNNSNSA SGTAEAVSAV TSHSNLINVS 120 ESKFYGNPNN LGFESGLLEQ GSDCGIFSEI GSFTNLINSS NNETMSFGFS TVLNGQGMEQ 180 GQWQQQHQKT MSMGGEDING GLLDQTVELS NLHNRSEGGG FGPLDWQGSG DQGLFDLPNA 240 VDQTYWSQSQ WTDQDHPSLY MP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	17	GGGRIFSGGG
2	9	18	GGGRIFSGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	6e-26	Dof family protein

Link Out ? help Back to Top
Ensembl	OMP12318