PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP12084

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 800aa MW: 91148.5 Da PI: 6.1947

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP12084	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.5	7.4e-31	76	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++++ ++k+rr r+ tr gCka ++v+++++g+w+v+kle+ HnHel+ OMP12084 76 NFYNAYAKQTGFSIRVNSYYRSKKDNSIISREFCCSKEGFRREKRSRnvdsgdDTKRRRARPITREGCKALMTVRRRENGQWYVAKLEKSHNHELV 171 6***************************************9998899999************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence
MEEEPSCGGK DMVDSYVGLE EEGDGCCVVE DENPMVLDDH GKEDEHVNFE FSQHLVGGIS 60 EPTLGMEFPS EDDARNFYNA YAKQTGFSIR VNSYYRSKKD NSIISREFCC SKEGFRREKR 120 SRNVDSGDDT KRRRARPITR EGCKALMTVR RRENGQWYVA KLEKSHNHEL VTPAMRHLLR 180 SHRQEFDPKK SLSSSMDSFG VGLNASVNVL TEECNSFGKL GFAAHNNINF IGRGRLSNFG 240 VDAQSLLGFF KVMQANDPAF YYAIQVDEED RLSSVFWVDT RSRIAYNCFS DVVSFDTTYQ 300 VNQYKMPFAP FIGVNNHRQS VLFGCALLAD ETESTFIWLF TTWLEAMSGR QPGLIVTDYD 360 SAICRAVECV FPQSCHRYCK WHILSKMPKE MGQVYGALLK TFQVEFDKCV NKSETPEEFE 420 SAWQLLVDKY TLRGNEWLQS LYIDRKLWVS TYVRNTFFAG MYTTQQSKTV NSLFDGYVHA 480 GTTLQDFAEQ YEKALDDRSE KEARAEFETF YTKPVLKTPL PIEKQAAEVY TRKLFSVFQD 540 EIYESLVLAV KSNDDDGLSR TYEVARFDEE NKVYLVGLNI TDHIASCSCK MFEFEGILCR 600 HVLAVFKAAN IFLLPQHYIL KRWTRNAKAE AILDTLPSGE MHGNNQKGKN SQYNLLYQEA 660 VKCAEEGMAS DHSFKVALNA LREARIKIIT AKKNAINAQK LETVASTNYQ DENTRVASQV 720 DSSSELVTLP DHQQANAKLG DSCAENNITR YPSEQSSNRV SICTNCKCPG HDSHSCLWLK 780 DARGSTSLVR SIFKRLFTPE

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence

MEEEPSCGGK DMVDSYVGLE EEGDGCCVVE DENPMVLDDH GKEDEHVNFE FSQHLVGGIS  60
EPTLGMEFPS EDDARNFYNA YAKQTGFSIR VNSYYRSKKD NSIISREFCC SKEGFRREKR  120
SRNVDSGDDT KRRRARPITR EGCKALMTVR RRENGQWYVA KLEKSHNHEL VTPAMRHLLR  180
SHRQEFDPKK SLSSSMDSFG VGLNASVNVL TEECNSFGKL GFAAHNNINF IGRGRLSNFG  240
VDAQSLLGFF KVMQANDPAF YYAIQVDEED RLSSVFWVDT RSRIAYNCFS DVVSFDTTYQ  300
VNQYKMPFAP FIGVNNHRQS VLFGCALLAD ETESTFIWLF TTWLEAMSGR QPGLIVTDYD  360
SAICRAVECV FPQSCHRYCK WHILSKMPKE MGQVYGALLK TFQVEFDKCV NKSETPEEFE  420
SAWQLLVDKY TLRGNEWLQS LYIDRKLWVS TYVRNTFFAG MYTTQQSKTV NSLFDGYVHA  480
GTTLQDFAEQ YEKALDDRSE KEARAEFETF YTKPVLKTPL PIEKQAAEVY TRKLFSVFQD  540
EIYESLVLAV KSNDDDGLSR TYEVARFDEE NKVYLVGLNI TDHIASCSCK MFEFEGILCR  600
HVLAVFKAAN IFLLPQHYIL KRWTRNAKAE AILDTLPSGE MHGNNQKGKN SQYNLLYQEA  660
VKCAEEGMAS DHSFKVALNA LREARIKIIT AKKNAINAQK LETVASTNYQ DENTRVASQV  720
DSSSELVTLP DHQQANAKLG DSCAENNITR YPSEQSSNRV SICTNCKCPG HDSHSCLWLK  780
DARGSTSLVR SIFKRLFTPE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMP12084