PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP11744
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARR-B
Protein Properties Length: 694aa    MW: 76361 Da    PI: 5.608
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP11744genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.53.4e-29208261155
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               k+r++W+ +LH++Fv+av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  OMP11744 208 KARVVWSVDLHRKFVQAVNQL-GPDKAVPKKILDLMDVEGLTRENVASHLQKYRL 261
               68*******************.********************************8 PP
2Myb_DNA-binding414.5e-13210260148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ +++ ++v+av+qlG++   +k+I   m  +g+t++++ s++qky+
         OMP11744 210 RVVWSVDLHRKFVQAVNQLGPDkaVPKKILDLMDvEGLTRENVASHLQKYR 260
                      678*****************99****************************7 PP
3Response_reg86.38.7e-29261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l+k +y +v+++ ++ +al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  Ga 
      OMP11744  26 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAMKALNMLRENKnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGAV 120
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
      OMP11744 121 DYLLKPVRMEELKN 134
                   ***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    
MPAEERMSGS NGEDGNKDLF PVGMRVLAVD DDPICLKVLE NLLRKCQYHV TTTNQAMKAL  60
NMLRENKNKY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAV  120
DYLLKPVRME ELKNIWQHVV RKKKPDSKDQ IKSQNQDKVW AGTGEAGQTS TSSSDQKVNK  180
KRKDQSEDEE EDGEDDEHEN DDPSTQKKAR VVWSVDLHRK FVQAVNQLGP DKAVPKKILD  240
LMDVEGLTRE NVASHLQKYR LYLKRLHSVA SQQANMVAAL GSKDPYNLHM GSLDGFGDFR  300
TLTGPGRLSS ASLSSYQPSG MFGRLNSSAS LSLRGISSGV VQQGHSQTLN NSINGLVKIQ  360
PSVLPTTQNQ NGTLFQGIPT SIELNQLSQN KPTNHFGEFN RVNGPNVFGV ATKFPDARVM  420
VGGSSNSLST ASGNPLLLQA NTQQTQSNGV FGNRSSLPLA SLNQDSFDVG VRGSNFLDHG  480
RCSDNWQGAV QLSNFPSSSL STSEAFSHEQ LPPSNLHDNI SWTSPQISNS PMDLSSSIAN  540
STSLDDSRGD MPCQVGLNNN VLQQWGDRRH DYSGNANHSF NRVDSLVSAS GAMMDQSNAI  600
SSKRTDVSLF RQLSGDAPYV VQHPDSEKSA FDTKFRSNED YLFDQAKPQN CFSQNNFEPF  660
EDLIGSMIKP EQNNETPLMD GEFGFESYPL GSCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-116ARR-B family protein