PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11696

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 672aa MW: 74486.4 Da PI: 7.1467

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11696	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39	1.9e-12	321	377	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g OMP11696 321 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 377 78*****************87776664446655.77****************98 PP
2	AP2	45.6	1.7e-14	422	471	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OMP11696 422 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 471 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MKSMSSNDDN NNNNNNTNWL GFSLSPQMKM EVTNHQTQSS SSSVAVAAAA AGSVTTAIPS 60 SSFFQSPSSS HHLNYGLYYG VEGTEYSNFP VMPLKSDGSL CLMEALGRSQ PQAMVPTTST 120 PKLEDFFGVA TMGTHHYESS DREAMALSLD SIYYHQQNAQ QANNNQNSQQ QIHQVQQYQQ 180 YYSGFRNQDM LLGEETRQTH VPTMADDDVA SASTGLKTWV SRNYPTTEHA MHQKMMGCCM 240 GDNNGAAESG SVGAMGYGDL QSLSLSMSPG SQSSCVTNSH QISPPVNEYV AMETKKRGPE 300 KVDQKQIVHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS RKGRQGGYDM 360 EEKAARAYDL AALKYWGPST HINFPLENYQ KELEGMKNMT RQEYVAHLRR KSSGFSRGAS 420 MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GVNAVTNFDI 480 TRYDVERIMA SNTLLAGELA RRNKDIGPGN EAISHNLLSE SSNGAETNIT PKNNIENQPD 540 WKMVLYQSSQ QLDQQKQSSM IENYKAQTFS LAPENNVVGI DTMNSGQRDL DDSSKMGTHH 600 FSNASSLVTS LSSSREESPD RSSLPIPFAM PPPGSKLFTT ANSAVNSWIP SAQLRPALSM 660 PHMPVFAAWT DA

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MKSMSSNDDN NNNNNNTNWL GFSLSPQMKM EVTNHQTQSS SSSVAVAAAA AGSVTTAIPS  60
SSFFQSPSSS HHLNYGLYYG VEGTEYSNFP VMPLKSDGSL CLMEALGRSQ PQAMVPTTST  120
PKLEDFFGVA TMGTHHYESS DREAMALSLD SIYYHQQNAQ QANNNQNSQQ QIHQVQQYQQ  180
YYSGFRNQDM LLGEETRQTH VPTMADDDVA SASTGLKTWV SRNYPTTEHA MHQKMMGCCM  240
GDNNGAAESG SVGAMGYGDL QSLSLSMSPG SQSSCVTNSH QISPPVNEYV AMETKKRGPE  300
KVDQKQIVHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS RKGRQGGYDM  360
EEKAARAYDL AALKYWGPST HINFPLENYQ KELEGMKNMT RQEYVAHLRR KSSGFSRGAS  420
MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GVNAVTNFDI  480
TRYDVERIMA SNTLLAGELA RRNKDIGPGN EAISHNLLSE SSNGAETNIT PKNNIENQPD  540
WKMVLYQSSQ QLDQQKQSSM IENYKAQTFS LAPENNVVGI DTMNSGQRDL DDSSKMGTHH  600
FSNASSLVTS LSSSREESPD RSSLPIPFAM PPPGSKLFTT ANSAVNSWIP SAQLRPALSM  660
PHMPVFAAWT DA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-129	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMP11696