PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMP11382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 26033.3 Da PI: 5.137 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.7e-39 | 19 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 aCaaCk++rrkC+++C+lap fp +++k+f n+hklFG+sn+ k +++l++ +r +am+s++y+A++ra+dPv G+++ i++lq+q+e ael+l++++ OMP11382 19 ACAACKYQRRKCNPNCILAPFFPPSRAKDFLNAHKLFGVSNIKKSIETLDPPQRAIAMKSIIYQANMRASDPVGGCYRYIFELQSQIEWITAELNLVNQR 118 7**********************************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MHKNGDNNDN NNSSAASQAC AACKYQRRKC NPNCILAPFF PPSRAKDFLN AHKLFGVSNI 60 KKSIETLDPP QRAIAMKSII YQANMRASDP VGGCYRYIFE LQSQIEWITA ELNLVNQRLA 120 ICKAQAAAAA AAASQEQPLM EVGQEEEVNP ILGLEGLNNA YVDQQRHEAE KHDQGKVYEG 180 STSSLSQVYN VFDTNSVKLE MEASVPLSDI SEDIKPLLAV FDDKGAEKFP FDSKVC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-37 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMP11382 |