PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP10996

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 358aa MW: 40282.7 Da PI: 8.699

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP10996	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.7	2e-42	133	282	3	136
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsssg.. 88 k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LG+dk+skt+eWLl+qakp+ik+l+++ +s+s++++++ OMP10996 133 SKRDRHSKIYTAKGPRDRRMRLSLEVAREFFGLQDMLGYDKASKTVEWLLKQAKPEIKKLVRSqmnhihgcsvfeaA-KSPSSTSEGEV---------Vsa 223 69***********************************************************55555555555431.22222223333.........133 PP TCP 89 ............kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 ++s++++k ++ ++++++ la++ r+karara+ rt+ k + +n++ OMP10996 224 iddkaaaaaaanG-KPSKKEKKVRPPRKTTFRPLARDLREKARARAKARTKAKSMSRNND 282 4444445666642.3333333333334444799999**************99988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MFPSNSNGNN DPIAYSDHSS SILQRQHFLN DIITPFSSKQ ELDFPLSCFQ YFPLSPYYNQ 60 CELELEEAYD VFQQQHHDLL QTLTADNSVS ETVINNMPDS SKNEEATVNC TTKSSHNNNN 120 ATDHQQIIRK RSSKRDRHSK IYTAKGPRDR RMRLSLEVAR EFFGLQDMLG YDKASKTVEW 180 LLKQAKPEIK KLVRSQMNHI HGCSVFEAAK SPSSTSEGEV VSAIDDKAAA AAAANGKPSK 240 KEKKVRPPRK TTFRPLARDL REKARARAKA RTKAKSMSRN NDLNITTPWS SFETGEESGT 300 HQDHTNSLQQ SVVASSHTSD HTRIHGDHMS DDSLAIMGKW SPNSIFNCLQ NTGGINQE

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MFPSNSNGNN DPIAYSDHSS SILQRQHFLN DIITPFSSKQ ELDFPLSCFQ YFPLSPYYNQ  60
CELELEEAYD VFQQQHHDLL QTLTADNSVS ETVINNMPDS SKNEEATVNC TTKSSHNNNN  120
ATDHQQIIRK RSSKRDRHSK IYTAKGPRDR RMRLSLEVAR EFFGLQDMLG YDKASKTVEW  180
LLKQAKPEIK KLVRSQMNHI HGCSVFEAAK SPSSTSEGEV VSAIDDKAAA AAAANGKPSK  240
KEKKVRPPRK TTFRPLARDL REKARARAKA RTKAKSMSRN NDLNITTPWS SFETGEESGT  300
HQDHTNSLQQ SVVASSHTSD HTRIHGDHMS DDSLAIMGKW SPNSIFNCLQ NTGGINQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	8e-24	TCP family protein

Link Out ? help Back to Top
Ensembl	OMP10996