PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMP06515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 26092.4 Da PI: 8.8007 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k OMP06515 61 KKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 114 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.9 | 1.3e-38 | 60 | 151 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yda+++e+++L++ev +L+ l+ OMP06515 60 EKKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDAISREKQKLQEEVMKLKGMLR 151 69*************************************************************************************98776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MDWNGTLRTF VSRPEPSLNF LYNYNYDQYP GMEMKHPGVL AEGAHGLVPA LDKNGYNNQE 60 KKKRLTSDQL DSLERSFQEE IKLDPDRKMK LSRELGLQPR QIAVWFQNRR ARWKAKQLER 120 LYDALKQEYD AISREKQKLQ EEVMKLKGML REQAPRNQVS TGYTEISGEE TVESTSIRSS 180 NKPRMAANQH QPIAECNYLF NVEEYNNVPV SSPYWGGVQL PSYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 90 | KKKRLTSDQLDSLERSFQEEIKLDPDRKMK |
2 | 109 | 117 | RRARWKAKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 5e-62 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OMP06515 |