PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP06302

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 810aa MW: 88796.8 Da PI: 6.4157

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP06302	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ OMP06302 55 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 99 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence
MRDRCLQCSH PPWLSLKRGF EAAVTLQQVL SMDTYSSGEE LVIKTRKPYT ITKQRERWTE 60 EEHNRFLEAL KLYGRAWQRI EEHIGTKTAV QIRSHAQKFF SKYVVGVEIL ALAYFIFSRA 120 EGLDELLNVL WGGICSEVVS ASMLFVLWCT LEKEAVAKGV PIGQALDIEI PPPRPKRKPS 180 NPYPRKTGAT TTSQVGAKDG KSEMPVSSLR YKQVLDLEKE PLPERPSGDE KATQKDNQDE 240 SCSEVFTLLH ETNCSSVSSV NKNSIPASAA LRSSCTFREF VPSLKETIQD NGRSKASNLE 300 NSCILHEKSV QGQKKDELDG ALRTDEMQAT HNYPRHVSVH VLDGSLGTCA QNPTLDVPFQ 360 DSAFHSVGDV HGQPNLFANP AASATTEHQH NAPRSNHQAF PTFHPPFTHV RPNQEDYRSF 420 LHVSSTFSSL IVSTLLQNPA AHAAASFAAT FWPYANVESS ADSPACSQGG FPPRQMNSAP 480 SMAAIAAATV AAATAWWAAH GLLPVCAPLH TGFTCAPAST AAVPPVEDGQ APAAKTEKKD 540 NTDQNLSMQD QQLDPECSEA LQAQHSASKS STSDSEEIGD AKLNTEVKAV NEEKDAAVTE 600 TQDANKTKNR KQVDRSSCGS NTPSSSEVET DALEKHEKDK EELKGADANH PQPECSNRRS 660 RSSSNLSDSW KEVSEEGRLA FRALFSRQKL PQSFSPPHDE KNKGQQKDSA DENPDEKDGV 720 TSALDLNMGS CCDHQEVEKN ESPRSENSAE KGLLTIGLGQ AKLKARRTGF KPYKRCSVEA 780 KENRMMNTVS GSQGEEKGPK RIRLEGEAST

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence

MRDRCLQCSH PPWLSLKRGF EAAVTLQQVL SMDTYSSGEE LVIKTRKPYT ITKQRERWTE  60
EEHNRFLEAL KLYGRAWQRI EEHIGTKTAV QIRSHAQKFF SKYVVGVEIL ALAYFIFSRA  120
EGLDELLNVL WGGICSEVVS ASMLFVLWCT LEKEAVAKGV PIGQALDIEI PPPRPKRKPS  180
NPYPRKTGAT TTSQVGAKDG KSEMPVSSLR YKQVLDLEKE PLPERPSGDE KATQKDNQDE  240
SCSEVFTLLH ETNCSSVSSV NKNSIPASAA LRSSCTFREF VPSLKETIQD NGRSKASNLE  300
NSCILHEKSV QGQKKDELDG ALRTDEMQAT HNYPRHVSVH VLDGSLGTCA QNPTLDVPFQ  360
DSAFHSVGDV HGQPNLFANP AASATTEHQH NAPRSNHQAF PTFHPPFTHV RPNQEDYRSF  420
LHVSSTFSSL IVSTLLQNPA AHAAASFAAT FWPYANVESS ADSPACSQGG FPPRQMNSAP  480
SMAAIAAATV AAATAWWAAH GLLPVCAPLH TGFTCAPAST AAVPPVEDGQ APAAKTEKKD  540
NTDQNLSMQD QQLDPECSEA LQAQHSASKS STSDSEEIGD AKLNTEVKAV NEEKDAAVTE  600
TQDANKTKNR KQVDRSSCGS NTPSSSEVET DALEKHEKDK EELKGADANH PQPECSNRRS  660
RSSSNLSDSW KEVSEEGRLA FRALFSRQKL PQSFSPPHDE KNKGQQKDSA DENPDEKDGV  720
TSALDLNMGS CCDHQEVEKN ESPRSENSAE KGLLTIGLGQ AKLKARRTGF KPYKRCSVEA  780
KENRMMNTVS GSQGEEKGPK RIRLEGEAST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	1e-123	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMP06302