PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP05309

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 975aa MW: 108047 Da PI: 6.5085

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP05309	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.8	1.1e-41	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ OMP05309 143 VCQVEDCGADLSSAKDYHRRHKVCEMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 220 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence
MEARLGTEAH HFYGMNPGKR TLEWDLNDWK WDGDLFIASS LNPVSADGIG RQLFPVGSGI 60 PVNSSNSSSS CSDEVNLDME KGKRELEKKR RVVVVEEDSL NEEAGSLTLK LGGHGANGYP 120 ISQREGTSGK KTKLSGGSGN RAVCQVEDCG ADLSSAKDYH RRHKVCEMHS KATKALVGNV 180 MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTNP ETVVNGNSLN DEQTSGYLLL 240 SLLRILSNMH SNRSDQTTDQ DVLSHLLRSL ANHAGEQGGR NISGLLPEPQ DSEAVSALFS 300 NGQGPPRPIK QQITRPASEM PEKAVRSHGT RAVEVQGKTT GAVKMNNFDL NDVYIDSDDG 360 TDDIERSPAP VNTVTSSLDC PSWVQQDSHQ SSPPQTSGNS DSASAQSPSS SSGDAQSRTD 420 RIVFKLFGKE PNDFPLVLRA QILDWLSHSP TDIESYIRPG CIVLTVYLRQ VEAAWDELRC 480 DLSFSLSRLL DCSDDTFWRT GWIYIRVQDQ IAFINNGQVV IDTSLPLRSN HYSKIMSVKP 540 IAISATERAQ FSVKGINLSR PATRLLCAVE GKYLVQEATH ELMDDNDDFK EQNELQCVNF 600 SCSIPIVTGR GFIEIEDHGL SSSFFPFIVA EEDVCSEIRM LESILEFADA DADVARPEIM 660 EAKNQAMDFI HEVGWLLHRS QLKSRLGHLD PNPESFPLRR FKWIMEFSMD REWCAVVKKL 720 LNILLDGVVG SGEHPSLMLA LTEMGLLHSA VRKNCRPLVE LLLRFVPEKH SDALEFGHKT 780 VAGGVHDSFL FKPDVLGPAG LTPLHIAAGK DGSEDVLDAL TNDPGKVGIS AWKSARDSTG 840 STPEDYARLR GHYSYIHLVQ KKINKRTASG HVVVDIPSAI SDCSTNQVQK KESTSSFEIG 900 QLELRSMQRH CKLCDQKPAY GYGFASRSLA YRPAMLSMVA IAAVCVCVAL LFKSCPEVLY 960 VFRPFRWELL DYGTS

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence

MEARLGTEAH HFYGMNPGKR TLEWDLNDWK WDGDLFIASS LNPVSADGIG RQLFPVGSGI  60
PVNSSNSSSS CSDEVNLDME KGKRELEKKR RVVVVEEDSL NEEAGSLTLK LGGHGANGYP  120
ISQREGTSGK KTKLSGGSGN RAVCQVEDCG ADLSSAKDYH RRHKVCEMHS KATKALVGNV  180
MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTNP ETVVNGNSLN DEQTSGYLLL  240
SLLRILSNMH SNRSDQTTDQ DVLSHLLRSL ANHAGEQGGR NISGLLPEPQ DSEAVSALFS  300
NGQGPPRPIK QQITRPASEM PEKAVRSHGT RAVEVQGKTT GAVKMNNFDL NDVYIDSDDG  360
TDDIERSPAP VNTVTSSLDC PSWVQQDSHQ SSPPQTSGNS DSASAQSPSS SSGDAQSRTD  420
RIVFKLFGKE PNDFPLVLRA QILDWLSHSP TDIESYIRPG CIVLTVYLRQ VEAAWDELRC  480
DLSFSLSRLL DCSDDTFWRT GWIYIRVQDQ IAFINNGQVV IDTSLPLRSN HYSKIMSVKP  540
IAISATERAQ FSVKGINLSR PATRLLCAVE GKYLVQEATH ELMDDNDDFK EQNELQCVNF  600
SCSIPIVTGR GFIEIEDHGL SSSFFPFIVA EEDVCSEIRM LESILEFADA DADVARPEIM  660
EAKNQAMDFI HEVGWLLHRS QLKSRLGHLD PNPESFPLRR FKWIMEFSMD REWCAVVKKL  720
LNILLDGVVG SGEHPSLMLA LTEMGLLHSA VRKNCRPLVE LLLRFVPEKH SDALEFGHKT  780
VAGGVHDSFL FKPDVLGPAG LTPLHIAAGK DGSEDVLDAL TNDPGKVGIS AWKSARDSTG  840
STPEDYARLR GHYSYIHLVQ KKINKRTASG HVVVDIPSAI SDCSTNQVQK KESTSSFEIG  900
QLELRSMQRH CKLCDQKPAY GYGFASRSLA YRPAMLSMVA IAAVCVCVAL LFKSCPEVLY  960
VFRPFRWELL DYGTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OMP05309