PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP05091
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 322aa    MW: 36397.9 Da    PI: 6.3807
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP05091genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.92.4e-311869103
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   +++d+++++lisw +  nsf+v ++ +f++++Lp yFkhsnf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i r+k++
      OMP05091   1 MVNDPTTDSLISWGKAHNSFIVNEPLDFSQRILPAYFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLKNIVRRKHS 86 
                   89********************************************************999.........*********************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MVNDPTTDSL ISWGKAHNSF IVNEPLDFSQ RILPAYFKHS NFSSFVRQLN TYGFRKVDPD  60
KWEFANEWFL RGQKHLLKNI VRRKHSKNPF MQVKTEDLDD DEIVMEIARL KEEQKSLEQE  120
LQGMNKRLEA TERRPQQMMA FLYKVVEDPD LLPRMMLEKE RTRQLNADKK RRLTMNMPPS  180
SYSSSSSLGV SNNSVKSEDE EEGSNPGVIS SPETRFDIDN NFCRSSYQYS SPSPEDSKEG  240
HRPIMGQVIN YGCATVTGQF PAVMMAPSVI GNSSAVVSSA TSSLAGYSDR NAQLGYFGEM  300
TAAGMEARQP PPYPFSLLGG GF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-84HSF family protein