PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP04973
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 438aa    MW: 49444.2 Da    PI: 6.4604
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP04973genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.41e-126464381374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svse.lykalppsetsekn.........sseelaal........k 82 
               +++lL++cAe +s++d+ +a++lL  ls ++sp+gd+++R+++ ft+AL+ r++r ++++ +  +++ s                      +        +
  OMP04973  46 MRQLLVSCAELISQSDFPAANRLLPILSSNSSPYGDSTERVVHQFTKALSLRINRlHGPRsVLMTMNFSYPIAAAtanaatinpN------YdidsslqsC 140
               589***************************************************9544431333333332221111112334441......1444444432 PP

      GRAS  83 l..fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
               +  +++++P+++f+hltaNqaIlea++ g++ vHiiDfdi++G+QWp+L+qaLa+R+    ++pp+lRiT+ g+    + + l++tg+rL kfA++lg++f
  OMP04973 141 YlsLNQITPFIRFAHLTANQAILEAIQvGQQSVHIIDFDIMHGVQWPPLMQALAERSaktlHPPPMLRITATGH----DLNILHRTGDRLFKFAQSLGLRF 237
               246***********************9466***************************888888***********....9********************** PP

      GRAS 177 efnvl...vak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
               +fn+l     +   +++   +++L + p+EalaVn++l lhrll+++ +       +L+ +k l+P+vv+++e+ea+hn++ Fl+rf+eal+yy+a+fdsl
  OMP04973 238 QFNPLlvlN-NdpaSVALNLPSTLTILPDEALAVNCMLYLHRLLKDDSTDLR---LFLHNIKALNPTVVTIAEREANHNHPLFLQRFVEALDYYTAIFDSL 334
               ****96531.2121233335789*********************76666555...9********************************************* PP

      GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
               ea+lp++s er  vE+ ++greiv++va+ g++rrerh++le+W+ +l+++GF++vpls +a++qaklllr ++ s+gy+++  ++s++lgW++rpL+svS
  OMP04973 335 EATLPPNSAERLAVEQIWFGREIVDIVAADGENRRERHQRLETWEVMLRSSGFSNVPLSPFAYSQAKLLLRLHYpSEGYQLQILNNSFFLGWQNRPLFSVS 435
               ***************************************************************************************************** PP

      GRAS 372 aWr 374
               +Wr
  OMP04973 436 SWR 438
               **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MLGSLDSTSR DQEEEDNPAA DLQHQPQQQP SPEFPSHSVS QQTIHMRQLL VSCAELISQS  60
DFPAANRLLP ILSSNSSPYG DSTERVVHQF TKALSLRINR LHGPRSVLMT MNFSYPIAAA  120
TANAATINPN YDIDSSLQSC YLSLNQITPF IRFAHLTANQ AILEAIQVGQ QSVHIIDFDI  180
MHGVQWPPLM QALAERSAKT LHPPPMLRIT ATGHDLNILH RTGDRLFKFA QSLGLRFQFN  240
PLLVLNNDPA SVALNLPSTL TILPDEALAV NCMLYLHRLL KDDSTDLRLF LHNIKALNPT  300
VVTIAEREAN HNHPLFLQRF VEALDYYTAI FDSLEATLPP NSAERLAVEQ IWFGREIVDI  360
VAADGENRRE RHQRLETWEV MLRSSGFSNV PLSPFAYSQA KLLLRLHYPS EGYQLQILNN  420
SFFLGWQNRP LFSVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-143GRAS family protein