PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP04854
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 372aa    MW: 41690.6 Da    PI: 4.4873
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP04854genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35491402102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++ed+++++++sws+  nsf+v+d+++f++++LpkyFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F  g+k+ll++ik
      OMP04854  49 FLTKTFEMVEDPSTDTVVSWSKARNSFIVWDSHKFSTTLLPKYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFLGGQKHLLKTIK 136
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
      OMP04854 137 RRRN 140
                   *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MEPVIIKEEE TVTFATGTAG LSSSASSSSS SNATPQPMEG LNEVGPPPFL TKTFEMVEDP  60
STDTVVSWSK ARNSFIVWDS HKFSTTLLPK YFKHSNFSSF IRQLNTYGFR KIDPDRWEFA  120
NEGFLGGQKH LLKTIKRRRN ILQSSQQQGG GACVEIGHFG LEGDLERLRR DRSMLLAEIV  180
RLRQQQQHSR DQILAMEERL LSTEKKQQQM MTFLAKALRN PTFFQQFARN KQMKGVEIGR  240
KRRLTATPSI ENLQDESLTV VADTDQELAT IESEIDTFLT SALDDESSTD INDPITSSVP  300
TCSGTNLGSL NETTWEELMA DDLIAGEPEE EIVVADQADL DVKVEDLAAS PADWADDLQE  360
LVDQMGYLRS KP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKTIKRR
2167172RLRRDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-132HSF family protein