PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMP04838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | SBP | ||||||||
Protein Properties | Length: 180aa MW: 20547.3 Da PI: 9.6064 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.1 | 1.2e-38 | 29 | 106 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C adl +ak+yhrrhkvC+ h+ka+ ++v+g++qrfCqqCsrfhels+fD +krsCr+rLa+hnerrrk+q+ OMP04838 29 CCQADECGADLRDAKQYHRRHKVCQPHAKAAFAFVKGIRQRFCQQCSRFHELSQFDGTKRSCRDRLAGHNERRRKAQS 106 6**************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MIRVVPRERF ERTCAQQSHS AAASANVLCC QADECGADLR DAKQYHRRHK VCQPHAKAAF 60 AFVKGIRQRF CQQCSRFHEL SQFDGTKRSC RDRLAGHNER RRKAQSEQQQ EQEAEDVELE 120 ASPTSNIMTS SSSTRHPKHG GELTLQGCAN TKHFRIRLLT TTFNIFLLRL FGTTLLLSMI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 2e-31 | SBP family protein |
Link Out ? help Back to Top | |
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Ensembl | OMP04838 |