PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP04680

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 804aa MW: 92457.5 Da PI: 8.0278

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP04680	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.6e-25	65	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++Y +YAk+ GF +r+s+ +ks+r++ i+ ++fvCskeg+r+++ + +++++ etrtgCka++ v+k+ ++w ++++ +HnHela OMP04680 65 EYYTKYAKHKGFGIRRSRVTKSRRTQVIIGQEFVCSKEGHRAKKYVNrEDRTQAAPDETRTGCKAMIYVSKKVgVDRWIISRFTRDHNHELA 156 69***************************************998834445556789**********99**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MVEPPMDEEI NLVDGIDQEY LCQTNLEVSN ENHDEHGNEE NSGNNQQILE PYNGMEFESL 60 EEGLEYYTKY AKHKGFGIRR SRVTKSRRTQ VIIGQEFVCS KEGHRAKKYV NREDRTQAAP 120 DETRTGCKAM IYVSKKVGVD RWIISRFTRD HNHELATPKS ASFLRAHRKR TRAQRNLIDV 180 LDDSGVRPSR IMLVLATESG GIDKVGLTER DIQNYLSNKR QKQLEKGDAQ LMLTYFRECQ 240 SKNPGFFYAI QMDAEGKLAN CFWADSRSRI AYKYFGDAVT FDPTYLTNKY KMPFVPFTGV 300 NHHHQSILFG CAPLWDETEE TFVWLLKTWL EAMYGNHSKT IITDQDASIS NAVAKVLPNS 360 VHHYCMWHIE KKFSENLSHV YHKFDDFKSQ FAKCIHNVLL PSEFESEWAA IMGKYGLQEN 420 SWLKKLYSIR EKWIPAYVRS SFCAGMSTTQ RSESMNKYFK DYVNASTPMS KFVIQYDKAL 480 DARYNKEREQ SFKTMNSKPI LKTMYPMEKE ASMVYTRKIF RKFQDELIHS QEYVAEKINV 540 VEQVYKYGVH EFDKKKLEYI VTFDVSSTTT ACKCHMFEFV GIPCRHQLAV LIKKKVHSLP 600 NHYFLDRWTR NSKKGEVDIT SDHDNNAPTS SMMLFNSVMV HSLELSEKAS RSQKHYDIAI 660 GGLQRLFEEL DALKIEDDKG NSPTDVVISK NVPEAVLRDE ETHLLSQNSI LLDPPHVTTK 720 GRPKSIRKKG SLEQKKRCGS SAEITSDPNA TKQVSSSHID QDSNTPQNLN QGQGSMSLES 780 QSHPTNSTDL TTTQAMQIGT SEKA

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MVEPPMDEEI NLVDGIDQEY LCQTNLEVSN ENHDEHGNEE NSGNNQQILE PYNGMEFESL  60
EEGLEYYTKY AKHKGFGIRR SRVTKSRRTQ VIIGQEFVCS KEGHRAKKYV NREDRTQAAP  120
DETRTGCKAM IYVSKKVGVD RWIISRFTRD HNHELATPKS ASFLRAHRKR TRAQRNLIDV  180
LDDSGVRPSR IMLVLATESG GIDKVGLTER DIQNYLSNKR QKQLEKGDAQ LMLTYFRECQ  240
SKNPGFFYAI QMDAEGKLAN CFWADSRSRI AYKYFGDAVT FDPTYLTNKY KMPFVPFTGV  300
NHHHQSILFG CAPLWDETEE TFVWLLKTWL EAMYGNHSKT IITDQDASIS NAVAKVLPNS  360
VHHYCMWHIE KKFSENLSHV YHKFDDFKSQ FAKCIHNVLL PSEFESEWAA IMGKYGLQEN  420
SWLKKLYSIR EKWIPAYVRS SFCAGMSTTQ RSESMNKYFK DYVNASTPMS KFVIQYDKAL  480
DARYNKEREQ SFKTMNSKPI LKTMYPMEKE ASMVYTRKIF RKFQDELIHS QEYVAEKINV  540
VEQVYKYGVH EFDKKKLEYI VTFDVSSTTT ACKCHMFEFV GIPCRHQLAV LIKKKVHSLP  600
NHYFLDRWTR NSKKGEVDIT SDHDNNAPTS SMMLFNSVMV HSLELSEKAS RSQKHYDIAI  660
GGLQRLFEEL DALKIEDDKG NSPTDVVISK NVPEAVLRDE ETHLLSQNSI LLDPPHVTTK  720
GRPKSIRKKG SLEQKKRCGS SAEITSDPNA TKQVSSSHID QDSNTPQNLN QGQGSMSLES  780
QSHPTNSTDL TTTQAMQIGT SEKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-177	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMP04680