PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP03065
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 519aa    MW: 58313.4 Da    PI: 6.3893
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP03065genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3481.6e-1061575131374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
               l++lLlecA a+s ++l +a+++L +l ++asp++ +  +R++ayf++A+++r+ +s+ ++++ l   +t       +  a+++f++vsP++kf+h+t Nq
  OMP03065 157 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYAaSCAERVVAYFAKAMSSRVINSWLGICSPLINYKT-------VHCAFQAFNNVSPFIKFAHFTSNQ 250
               5789******************************97889***********************87754444.......457899****************** PP

      GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
               aIlea+++ +rvHiiD+di+qGlQWpaL++ La+R eg+p++R+Tg+gs    s e l etg++L++fA++lg++fef++ +ak++ +++++++++++gE+
  OMP03065 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRIEGAPHVRMTGMGS----SMELLVETGKQLSNFAKRLGMSFEFHP-IAKKFGEIDISMIQLRRGET 346
               *************************************************....***************************.7******************* PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               laV++    h+l+d +++  +    +L+l+ +l P+v+++veq+++h ++ Fl+rf+ +l+yys++fdsl a l +++ +r+ +E+ ll rei n++a  g
  OMP03065 347 LAVHWLQ--HSLYDATGPDWK----TLRLFEQLGPRVITLVEQDLSH-GGVFLDRFVGSLHYYSTMFDSLGAYLLADDPNRHRIEHCLLYREINNILAIGG 440
               ******9..999999999888....**********************.789************************************************** PP

      GRAS 303 aerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +r  +  ++++Wr+ l++   F ++p+s++ ++qa+l+l++++  +gy++ + +g+l lgWkd +L+++SaW+
  OMP03065 441 PARSGED-KFKHWRSELSRsNCFVQLPMSSNSMAQAQLILNMFPpAHGYSLVQGDGTLRLGWKDTSLFTASAWT 513
               **77665.5********98568***************************************************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    
MMKGGFEVVH ATLDMIQPHH EPLWDNFASS VAFPTSVNSV PRQTVENRCV NLERNELSEW  60
VEQVTKQLID DLPPEPETRP DHSSSLQDAD TSTMVCDDSF GAPLLPAGDF SRPRKIRRSV  120
LDCGAGEELQ WSNNELGNVN NVSENKLNRL DEQGLSLITL LLECAVAISV DNLGEAHRML  180
LELTQMASPY AASCAERVVA YFAKAMSSRV INSWLGICSP LINYKTVHCA FQAFNNVSPF  240
IKFAHFTSNQ AILEAFHRRD RVHIIDLDIM QGLQWPALFH ILATRIEGAP HVRMTGMGSS  300
MELLVETGKQ LSNFAKRLGM SFEFHPIAKK FGEIDISMIQ LRRGETLAVH WLQHSLYDAT  360
GPDWKTLRLF EQLGPRVITL VEQDLSHGGV FLDRFVGSLH YYSTMFDSLG AYLLADDPNR  420
HRIEHCLLYR EINNILAIGG PARSGEDKFK HWRSELSRSN CFVQLPMSSN SMAQAQLILN  480
MFPPAHGYSL VQGDGTLRLG WKDTSLFTAS AWTSSHAFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-142GRAS family protein