PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMP03065 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 519aa MW: 58313.4 Da PI: 6.3893 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 348 | 1.6e-106 | 157 | 513 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lLlecA a+s ++l +a+++L +l ++asp++ + +R++ayf++A+++r+ +s+ ++++ l +t + a+++f++vsP++kf+h+t Nq OMP03065 157 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYAaSCAERVVAYFAKAMSSRVINSWLGICSPLINYKT-------VHCAFQAFNNVSPFIKFAHFTSNQ 250 5789******************************97889***********************87754444.......457899****************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 aIlea+++ +rvHiiD+di+qGlQWpaL++ La+R eg+p++R+Tg+gs s e l etg++L++fA++lg++fef++ +ak++ +++++++++++gE+ OMP03065 251 AILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRIEGAPHVRMTGMGS----SMELLVETGKQLSNFAKRLGMSFEFHP-IAKKFGEIDISMIQLRRGET 346 *************************************************....***************************.7******************* PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302 laV++ h+l+d +++ + +L+l+ +l P+v+++veq+++h ++ Fl+rf+ +l+yys++fdsl a l +++ +r+ +E+ ll rei n++a g OMP03065 347 LAVHWLQ--HSLYDATGPDWK----TLRLFEQLGPRVITLVEQDLSH-GGVFLDRFVGSLHYYSTMFDSLGAYLLADDPNRHRIEHCLLYREINNILAIGG 440 ******9..999999999888....**********************.789************************************************** PP GRAS 303 aerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r + ++++Wr+ l++ F ++p+s++ ++qa+l+l++++ +gy++ + +g+l lgWkd +L+++SaW+ OMP03065 441 PARSGED-KFKHWRSELSRsNCFVQLPMSSNSMAQAQLILNMFPpAHGYSLVQGDGTLRLGWKDTSLFTASAWT 513 **77665.5********98568***************************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence |
MMKGGFEVVH ATLDMIQPHH EPLWDNFASS VAFPTSVNSV PRQTVENRCV NLERNELSEW 60 VEQVTKQLID DLPPEPETRP DHSSSLQDAD TSTMVCDDSF GAPLLPAGDF SRPRKIRRSV 120 LDCGAGEELQ WSNNELGNVN NVSENKLNRL DEQGLSLITL LLECAVAISV DNLGEAHRML 180 LELTQMASPY AASCAERVVA YFAKAMSSRV INSWLGICSP LINYKTVHCA FQAFNNVSPF 240 IKFAHFTSNQ AILEAFHRRD RVHIIDLDIM QGLQWPALFH ILATRIEGAP HVRMTGMGSS 300 MELLVETGKQ LSNFAKRLGM SFEFHPIAKK FGEIDISMIQ LRRGETLAVH WLQHSLYDAT 360 GPDWKTLRLF EQLGPRVITL VEQDLSHGGV FLDRFVGSLH YYSTMFDSLG AYLLADDPNR 420 HRIEHCLLYR EINNILAIGG PARSGEDKFK HWRSELSRSN CFVQLPMSSN SMAQAQLILN 480 MFPPAHGYSL VQGDGTLRLG WKDTSLFTAS AWTSSHAFR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-142 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMP03065 |