PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP02546
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 322aa    MW: 35745 Da    PI: 9.8705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP02546genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.1e-191862145
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              k+ien+  r +tfskRr gi KKA+EL +LC+ae+a i+fs+ gk
  OMP02546 18 KKIENEDDRLITFSKRRSGIYKKASELTTLCGAEIAFIVFSPAGK 62
              68*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MSAAPVKKTK GRQKIEMKKI ENEDDRLITF SKRRSGIYKK ASELTTLCGA EIAFIVFSPA  60
GKPFSFGHPS VESVANRFLN QNPPPNDNTH PLVEAHRKVR INHLTQQHNE LLNQLDAEKE  120
RAKALEQVTG GKGKLRNEVV SKLNDKGAAA APLINGAMDP SQLMANPFDH VNANEEVVPV  180
IFAAPAPGYG PVFPVIDLRL VITYVRVELV ADRFLNQDKE PKVSIPSHVE PQTQSNVQKL  240
NQELNELTKQ VQAEKKKGEM LAKAIKAASG KQYKPEKPIK ELTLDELFEK KKSLEELREK  300
LQGRVNEIEA SSSLLLLSNQ GA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-37M-type_MADS family protein