PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP02367
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YA
Protein Properties Length: 376aa    MW: 41431.7 Da    PI: 9.1482
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP02367genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.41.5e-30205261158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d p+YVNaKQy++I++RRq+Rak+  e+k+ +ksrkpy+h SRh hA+rRpRg+gGrF
   OMP02367 205 DGPIYVNAKQYNGIIRRRQSRAKAVLENKV-TKSRKPYMHYSRHLHAMRRPRGCGGRF 261
                57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MAMQTLYLKE HDGIVHNPMG QLAAASVPSI PWWTALGSQS VYGDSCGQLK PLLVENHDQL  60
TSTKQAGRVT EHHEVINKGN PAQFTIFPEN GQRQDEVWST EEHEKFCGKM LRIVRTKAGS  120
LCEEVRMLVE TDSAERMGDG KNAGDGQKPQ TIISLQSSPS DNRRYELPMV CAKYPYRDQC  180
YGVFSTYGPQ VSGRVMLPLN LTTEDGPIYV NAKQYNGIIR RRQSRAKAVL ENKVTKSRKP  240
YMHYSRHLHA MRRPRGCGGR FLNTKPSNGD KDGIEKKKVA SGGPFSHPTG SQNSEVLQSD  300
SGTLNSSKEA NGGGSTISGS EVTSMYSRGG DNIDHFSINN LGLSVHSLPG MMDHGRRSVM  360
PTKWVATADN CCNLKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-58NF-YA family protein