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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMP00043 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | NAC | ||||||||
| Protein Properties | Length: 304aa MW: 34689.4 Da PI: 4.9768 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 50.5 | 7e-16 | 7 | 163 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.......tgkrknra................. 77
pGfrF+Pt e ++++yL+ ++g++l+ ++++e+d+y ePw+L + ++++ w f + + k+ + t +
OMP00043 7 RPGFRFSPTGEVVLQCYLRDAINGQNLPS-DIFTEADLYGDkEPWKLFN-PNHSHPYWVFTHLKMKRDSvsvakqtT------Tkkkgkgnskakknreee 99
79**************************9.99******97549****53.233334454444444433333321110......011233444444444556 PP
NAM 78 .......tksgyWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
+ g Wk + + s +ge+ g + f +g++p+ ++ +W+mhe+++
OMP00043 100 eekhdrtAGGGSWKGRSVHDILSSDDGEKLGFDREYKFKlnhddegRGSNPN-SNGNWIMHEFSI 163
66555548899***98887666666999999999999997777755556666.699*******86 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 304 aa Download sequence |
MPLQSLRPGF RFSPTGEVVL QCYLRDAING QNLPSDIFTE ADLYGDKEPW KLFNPNHSHP 60 YWVFTHLKMK RDSVSVAKQT TTKKKGKGNS KAKKNREEEE EKHDRTAGGG SWKGRSVHDI 120 LSSDDGEKLG FDREYKFKLN HDDEGRGSNP NSNGNWIMHE FSIKGCDLVI CEIKNLKRKR 180 KGTERDSHDL DDDSRVSKKL DVGDRDHQLQ VCAITEEQAG LVDTPLPDDD DDFLKKLDVG 240 DRDHQLQVCP IPEEQSGLVD APVPDDDDDF VNSLLNSEWD WNFIASDREF SSPLQQQQHI 300 PLVF |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G17730.1 | 2e-08 | NAC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMP00043 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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