PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO99836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 418aa MW: 47449.1 Da PI: 8.0278 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 334.4 | 2.1e-102 | 37 | 417 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lLl+cA++ ssg+l++a+++L ++ las +gd+mqRl a f+ ALa rl++ +++l kal+ ++ + +e +a lf +++P+l fs+ + + OMO99836 37 LIQLLLSCAKHTSSGNLHRADECLRQILLLASVSGDSMQRLSARFASALAIRLVKRWPGLHKALNYTQLP---KQEFDQAKPLFRQAFPYLGFSYAIISHV 134 689******************************************************************9...6777778999****************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202 + +a+ ge+ +H +D++ + W+ Ll++L++ p+gpp+l++T ++s +k le++g rL k Ae+l++pf+fn+l +l +l+l++L+v++gEal OMO99836 135 LIRAMVGERVIHLVDLGSGDENLWIQLLRSLSCLPDGPPHLKVTYLNS----NKAILEKLGPRLVKEAEALDMPFQFNPL-NVSLRELTLDMLKVRSGEAL 230 ************************************************....99*************************5.889***************** PP GRAS 203 aVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvEr 287 a ++l+lh+ll ++ + +++ ++L +++s+sPk++ +veqeadhn +++++rf+e l+yysa+fds++ak+++ s er ++E+ OMO99836 231 AFISILNLHTLLaeddrvdahfgdnknINDIKDSKQMCRFLTMIRSVSPKLLLLVEQEADHNLNRLVDRFVEGLHYYSAVFDSIDAKFGAMSsGERLVLEE 331 ***********************9988334444445778*************************************************9988789999999 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +g+ei+n+vaceg er+erhe++++W r+++ GFkpv++ ++ ++ak +++ ++ d y++ +e++sl+++W+drpL++vSaW+ OMO99836 332 M-IGKEIENIVACEGLERQERHERYGRWLVRFGQGGFKPVRIWYDSIENAKQMVEACGRDRYKIINEKASLMICWHDRPLYAVSAWT 417 9.********************************************************999*************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence |
MSTSIPFPKP EVTLSLTLSP SPTPLEALKP EERGIRLIQL LLSCAKHTSS GNLHRADECL 60 RQILLLASVS GDSMQRLSAR FASALAIRLV KRWPGLHKAL NYTQLPKQEF DQAKPLFRQA 120 FPYLGFSYAI ISHVLIRAMV GERVIHLVDL GSGDENLWIQ LLRSLSCLPD GPPHLKVTYL 180 NSNKAILEKL GPRLVKEAEA LDMPFQFNPL NVSLRELTLD MLKVRSGEAL AFISILNLHT 240 LLAEDDRVDA HFGDNKNIND IKDSKQMCRF LTMIRSVSPK LLLLVEQEAD HNLNRLVDRF 300 VEGLHYYSAV FDSIDAKFGA MSSGERLVLE EMIGKEIENI VACEGLERQE RHERYGRWLV 360 RFGQGGFKPV RIWYDSIENA KQMVEACGRD RYKIINEKAS LMICWHDRPL YAVSAWTC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-111 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO99836 |