PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO99836
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 418aa    MW: 47449.1 Da    PI: 8.0278
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO99836genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.42.1e-102374171374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lLl+cA++ ssg+l++a+++L ++  las +gd+mqRl a f+ ALa rl++ +++l kal+ ++ +    +e  +a  lf +++P+l fs+ +  + 
  OMO99836  37 LIQLLLSCAKHTSSGNLHRADECLRQILLLASVSGDSMQRLSARFASALAIRLVKRWPGLHKALNYTQLP---KQEFDQAKPLFRQAFPYLGFSYAIISHV 134
               689******************************************************************9...6777778999****************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               + +a+ ge+ +H +D++ +    W+ Ll++L++ p+gpp+l++T ++s    +k  le++g rL k Ae+l++pf+fn+l   +l +l+l++L+v++gEal
  OMO99836 135 LIRAMVGERVIHLVDLGSGDENLWIQLLRSLSCLPDGPPHLKVTYLNS----NKAILEKLGPRLVKEAEALDMPFQFNPL-NVSLRELTLDMLKVRSGEAL 230
               ************************************************....99*************************5.889***************** PP

      GRAS 203 aVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvEr 287
               a  ++l+lh+ll                ++ + +++  ++L +++s+sPk++ +veqeadhn +++++rf+e l+yysa+fds++ak+++ s  er ++E+
  OMO99836 231 AFISILNLHTLLaeddrvdahfgdnknINDIKDSKQMCRFLTMIRSVSPKLLLLVEQEADHNLNRLVDRFVEGLHYYSAVFDSIDAKFGAMSsGERLVLEE 331
               ***********************9988334444445778*************************************************9988789999999 PP

      GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               + +g+ei+n+vaceg er+erhe++++W  r+++ GFkpv++ ++  ++ak +++ ++ d y++ +e++sl+++W+drpL++vSaW+
  OMO99836 332 M-IGKEIENIVACEGLERQERHERYGRWLVRFGQGGFKPVRIWYDSIENAKQMVEACGRDRYKIINEKASLMICWHDRPLYAVSAWT 417
               9.********************************************************999*************************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MSTSIPFPKP EVTLSLTLSP SPTPLEALKP EERGIRLIQL LLSCAKHTSS GNLHRADECL  60
RQILLLASVS GDSMQRLSAR FASALAIRLV KRWPGLHKAL NYTQLPKQEF DQAKPLFRQA  120
FPYLGFSYAI ISHVLIRAMV GERVIHLVDL GSGDENLWIQ LLRSLSCLPD GPPHLKVTYL  180
NSNKAILEKL GPRLVKEAEA LDMPFQFNPL NVSLRELTLD MLKVRSGEAL AFISILNLHT  240
LLAEDDRVDA HFGDNKNIND IKDSKQMCRF LTMIRSVSPK LLLLVEQEAD HNLNRLVDRF  300
VEGLHYYSAV FDSIDAKFGA MSSGERLVLE EMIGKEIENI VACEGLERQE RHERYGRWLV  360
RFGQGGFKPV RIWYDSIENA KQMVEACGRD RYKIINEKAS LMICWHDRPL YAVSAWTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-111GRAS family protein