PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO99686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 465aa    MW: 51415.6 Da    PI: 4.957
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO99686genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12130152426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               e C ++++tG Ck+G++CkF+H+
  OMO99686 130 EDCAYYMKTGLCKFGSNCKFNHP 152
               89********************9 PP

2zf-CCCH30.85e-10176200327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               + +C++++rtG Ck+G  C+++H++
  OMO99686 176 QTECKYYLRTGGCKFGKACRYNHSR 200
               568********************95 PP

3zf-CCCH39.97.2e-13221245226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               ++++C++++r+G CkyG++C+F+H+
  OMO99686 221 GEKECPYYMRNGSCKYGANCRFNHP 245
               7899********************9 PP

4zf-CCCH28.52.7e-09357383127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C +f++tG Ck+ ++Ck++H++
  OMO99686 357 PGQPECTYFMKTGDCKFKSNCKYNHPK 383
               5789*********************96 PP

5zf-CCCH34.33.9e-11404428226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               +++ C++++r+G+Ck+G+ CkF H+
  OMO99686 404 DQSMCSHYSRYGICKFGPACKFDHS 428
               5678********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    
MSQSEETPIS DITPSDSAPH LGLHSPDPDP TPIPDPDLNH SAEESLLHQN NLHQQLQDLD  60
LKAEEEEEAA AEEKDDGDRE SDKDADVYAA GEEEEDDDDD EEKNENENDD ENVKKNEGRR  120
SHYPVRPEAE DCAYYMKTGL CKFGSNCKFN HPVRRKNQAV KEKIKEKDES AEKPSQTECK  180
YYLRTGGCKF GKACRYNHSR AKNSAAPILE LNFLGLPIRP GEKECPYYMR NGSCKYGANC  240
RFNHPDPTTT AAGDPPSAYG NGGSVSSQAA SQVNMPSWSS PRTVNETAAY MPMMFPPTQG  300
VPPPNPEWNG YQTTVYPPAE RGLHPTPAYV MSNPSTESTV YTHHQPQMVV DEFPVRPGQP  360
ECTYFMKTGD CKFKSNCKYN HPKNRVAKPA PCTLSDKGLP LRPDQSMCSH YSRYGICKFG  420
PACKFDHSIQ AAPPPEPLPF SNSAATEPSG FAGSNGTDTA VKQPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-129C3H family protein