PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO99686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 465aa MW: 51415.6 Da PI: 4.957 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.8e-12 | 130 | 152 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G++CkF+H+ OMO99686 130 EDCAYYMKTGLCKFGSNCKFNHP 152 89********************9 PP | |||||||
2 | zf-CCCH | 30.8 | 5e-10 | 176 | 200 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG Ck+G C+++H++ OMO99686 176 QTECKYYLRTGGCKFGKACRYNHSR 200 568********************95 PP | |||||||
3 | zf-CCCH | 39.9 | 7.2e-13 | 221 | 245 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ OMO99686 221 GEKECPYYMRNGSCKYGANCRFNHP 245 7899********************9 PP | |||||||
4 | zf-CCCH | 28.5 | 2.7e-09 | 357 | 383 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ ++Ck++H++ OMO99686 357 PGQPECTYFMKTGDCKFKSNCKYNHPK 383 5789*********************96 PP | |||||||
5 | zf-CCCH | 34.3 | 3.9e-11 | 404 | 428 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++r+G+Ck+G+ CkF H+ OMO99686 404 DQSMCSHYSRYGICKFGPACKFDHS 428 5678********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence |
MSQSEETPIS DITPSDSAPH LGLHSPDPDP TPIPDPDLNH SAEESLLHQN NLHQQLQDLD 60 LKAEEEEEAA AEEKDDGDRE SDKDADVYAA GEEEEDDDDD EEKNENENDD ENVKKNEGRR 120 SHYPVRPEAE DCAYYMKTGL CKFGSNCKFN HPVRRKNQAV KEKIKEKDES AEKPSQTECK 180 YYLRTGGCKF GKACRYNHSR AKNSAAPILE LNFLGLPIRP GEKECPYYMR NGSCKYGANC 240 RFNHPDPTTT AAGDPPSAYG NGGSVSSQAA SQVNMPSWSS PRTVNETAAY MPMMFPPTQG 300 VPPPNPEWNG YQTTVYPPAE RGLHPTPAYV MSNPSTESTV YTHHQPQMVV DEFPVRPGQP 360 ECTYFMKTGD CKFKSNCKYN HPKNRVAKPA PCTLSDKGLP LRPDQSMCSH YSRYGICKFG 420 PACKFDHSIQ AAPPPEPLPF SNSAATEPSG FAGSNGTDTA VKQPV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-129 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO99686 |