PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO99580

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ZF-HD

Protein Properties

Length: 418aa MW: 45767.4 Da PI: 8.4749

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO99580	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.3	1.7e-28	81	136	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCg..EfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrY+eClkNhAa++Gg+a+DGCg Efmp+ geegt +alkC+AC+CHRnFHR+e + OMO99580 81 VRYRECLKNHAAAIGGNATDGCGagEFMPN-GEEGTLEALKCSACNCHRNFHRKEIQ 136 89******************5558.999******************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MGLQLYQETR LVVLSPDLGL VSSKAALKCL GKPSPESKLA AFRSQKSTVG SSRLQGWAIE 60 CAKDAHWQWC NARCQNAIAL VRYRECLKNH AAAIGGNATD GCGAGEFMPN GEEGTLEALK 120 CSACNCHRNF HRKEIQCDCP FPFDCYHNSA PLINSGRKLI LGPHQNYILA ASPAAAVTAV 180 PPLMKAGSSV PSETDEKLDD NGGGGGGGRV GAKGSGGGGK LVRKSFRTKF SQEQKEKMLK 240 FAEKAEWRIQ KLDESVVQQL CQEIGIKRRV LKETGMALIA TACKKTENPQ DCISLLESDP 300 RSFISNLTGL ARIALEITAW KANTSLIVAE YWLQHAKDYP GWASASACRG GYEFSMNSMQ 360 DSLRAFDELK FDKSYQSLQY VISNVTYCEN MRADGFNDLN ATMLKITKYV LAILHQLF

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MGLQLYQETR LVVLSPDLGL VSSKAALKCL GKPSPESKLA AFRSQKSTVG SSRLQGWAIE  60
CAKDAHWQWC NARCQNAIAL VRYRECLKNH AAAIGGNATD GCGAGEFMPN GEEGTLEALK  120
CSACNCHRNF HRKEIQCDCP FPFDCYHNSA PLINSGRKLI LGPHQNYILA ASPAAAVTAV  180
PPLMKAGSSV PSETDEKLDD NGGGGGGGRV GAKGSGGGGK LVRKSFRTKF SQEQKEKMLK  240
FAEKAEWRIQ KLDESVVQQL CQEIGIKRRV LKETGMALIA TACKKTENPQ DCISLLESDP  300
RSFISNLTGL ARIALEITAW KANTSLIVAE YWLQHAKDYP GWASASACRG GYEFSMNSMQ  360
DSLRAFDELK FDKSYQSLQY VISNVTYCEN MRADGFNDLN ATMLKITKYV LAILHQLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	2e-49	ZF-HD family protein

Link Out ? help Back to Top
Ensembl	OMO99580