PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO99318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GATA | ||||||||
Protein Properties | Length: 245aa MW: 27231.6 Da PI: 8.2079 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.3 | 1.2e-19 | 167 | 201 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l OMO99318 167 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 201 *******************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
METFDMAACL EDNLLDFGSD VGEEDEDEEK SKRLSNLNSS SSLNPNRTLP EFVEEELEWL 60 SNKDAFPAVE TSFILGNVEK HQSPVSVLDN SNSSSNSNSS GSTLLSNGSI VMYCCGNLKV 120 PVKARSKRLR KCRDLRNQEN SWWVYENVKN ANANVKGTGS RTIGRKCQHC GAEKTPQWRA 180 GPLGPKTLCN ACGVRFKSGR LVPEYRPASS PTFSTELHSN SHRKILEMRK QKGLTTLKPM 240 DIEKG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 8e-49 | GATA family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO99318 |