PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO99100

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 814aa MW: 89067.3 Da PI: 8.9357

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO99100	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.7	1.9e-13	108	134	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykte+Cr + + G+C+yG+rC+FaHg+ OMO99100 108 YKTEICRAWEELGHCQYGSRCQFAHGK 134 9************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence
MESYKESNKL IVLSSNIPKL MISPRTRANY YSSPESIMKY LRSSPLASSG SSSSAKSSFR 60 SSASPQLKTP LKVVEEDVLV VDGVLVASDT NILGSGSSSS SSGTPGFYKT EICRAWEELG 120 HCQYGSRCQF AHGKEEERPT FYPFKSKPEA QMYMSYSSPL SGTYGSKSKS RLLHPAMETT 180 AIMTPKDSTP RPYYPSRNSS TPPTKAEDTI NSFFTPQPEH ARLTANFTMK PKISKISPFT 240 IRPDLGAATS TNETNWSPQD DGIDVTLPSL SGKTPSRGDV DAYIDKILYG PATRRRFPVF 300 SAFCPEHFSS NIIILKSKKD VWTNGNAQEQ PHPNKRMPLS LTLSPSSNFS LLSPTPNRTH 360 YRFSKFTIPH ASTQLAPKPP PVLKTAPVIV IGGGLAGLAA ATRLNSDNIP FLLLEASDGV 420 GGRVRTDVVD GFLLDRGFQI FITAYPEAQK LLNYNELNLQ RFYSGARVYY DGQFHTVADP 480 LRHFSDSLLS LTNPIGSIVD KLLIALTRAR VLTKSDEDIL TAGEVSTIEL LKSIGFSDSM 540 IGRFFRPFFG GIFFDRELET TSRLFDFIFK CLALGDNTLP AKGIGEIPNQ LAAKLPSDSI 600 LLNSKVVSVD FEDSNSPSVR LESGEVLKSE LGVIMAVDEP AVDKILAGRK RPVQTKKPAR 660 STVCLYFTAD KNQIPVRDPV LFLNGSGKGI VNNMFFATNV APSYGPADKA LVSVSLIGVF 720 EDVSDDDLTA EVIREVSGWF GASIADSWKH LRTYRIGFAQ PNQSPPTDLM KNPNVEPGLY 780 LCGDYMTSAT FDGALVSGRR AVEALLKDRA LARV

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence

MESYKESNKL IVLSSNIPKL MISPRTRANY YSSPESIMKY LRSSPLASSG SSSSAKSSFR  60
SSASPQLKTP LKVVEEDVLV VDGVLVASDT NILGSGSSSS SSGTPGFYKT EICRAWEELG  120
HCQYGSRCQF AHGKEEERPT FYPFKSKPEA QMYMSYSSPL SGTYGSKSKS RLLHPAMETT  180
AIMTPKDSTP RPYYPSRNSS TPPTKAEDTI NSFFTPQPEH ARLTANFTMK PKISKISPFT  240
IRPDLGAATS TNETNWSPQD DGIDVTLPSL SGKTPSRGDV DAYIDKILYG PATRRRFPVF  300
SAFCPEHFSS NIIILKSKKD VWTNGNAQEQ PHPNKRMPLS LTLSPSSNFS LLSPTPNRTH  360
YRFSKFTIPH ASTQLAPKPP PVLKTAPVIV IGGGLAGLAA ATRLNSDNIP FLLLEASDGV  420
GGRVRTDVVD GFLLDRGFQI FITAYPEAQK LLNYNELNLQ RFYSGARVYY DGQFHTVADP  480
LRHFSDSLLS LTNPIGSIVD KLLIALTRAR VLTKSDEDIL TAGEVSTIEL LKSIGFSDSM  540
IGRFFRPFFG GIFFDRELET TSRLFDFIFK CLALGDNTLP AKGIGEIPNQ LAAKLPSDSI  600
LLNSKVVSVD FEDSNSPSVR LESGEVLKSE LGVIMAVDEP AVDKILAGRK RPVQTKKPAR  660
STVCLYFTAD KNQIPVRDPV LFLNGSGKGI VNNMFFATNV APSYGPADKA LVSVSLIGVF  720
EDVSDDDLTA EVIREVSGWF GASIADSWKH LRTYRIGFAQ PNQSPPTDLM KNPNVEPGLY  780
LCGDYMTSAT FDGALVSGRR AVEALLKDRA LARV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-08	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO99100