PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO98631

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 269aa MW: 29029.6 Da PI: 8.7118

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO98631	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.4e-05	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H OMO98631 105 FTCGFCKKEFSTSQALGGHQNAH 127 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
METLCAKPCS SDTSSISAAA SEETQNKGGI GVPEQMMMAK LKEKILLRQE SLDESKPLQP 60 RSSGLHLCLS DKFSGDESIH GSEVELKLSS MGSRSQAKQS KPRAFTCGFC KKEFSTSQAL 120 GGHQNAHKQE RAIAKRRKEM DLGGGLGHNR QFSYYPYSSL SQSPLYGSFN RALGVRIESL 180 IHKPVATPPT YPWTAAASTT LGYRFGHGAI MMETNFQTPK STSSSTFPTM VAAANSSISG 240 STKKAATTSS SDHHDDHDDD SGLDLTLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-18	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO98631