PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO98438 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | NF-YC | ||||||||
Protein Properties | Length: 248aa MW: 28604.6 Da PI: 10.6663 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 41.5 | 2.9e-13 | 142 | 230 | 11 | 99 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +++ + k ++P+ rik+i+k+++ + ++ ++ ka e fi ++ + + + +r++l ++++v + +dfl d vp++ OMO98438 142 GEEGEAKMCRFPMNRIKRIMKSEDSRIALPQDVVFIVNKATEKFIEQFCQDGYKSCVKDRRKSLSYKHLSTVVRERRRYDFLSDYVPEK 230 4567889999**************9999**********************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MASSKKPKEE DKKRKSNSSS VVKDRKKAIK KPEKKTSSTK SPNRSKPDRK KAIKKPEKRT 60 SSTKSPNKSK PKPKPKPKPT PKSKPDNNKS KKMSSNGTLV EDPSSSNDSE EDENGKKVRS 120 KNVTPNNKRK RKEKIEENEE EGEEGEAKMC RFPMNRIKRI MKSEDSRIAL PQDVVFIVNK 180 ATEKFIEQFC QDGYKSCVKD RRKSLSYKHL STVVRERRRY DFLSDYVPEK IKAEDALKER 240 NLTETEAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 15 | PKEEDKKRK |
2 | 12 | 35 | KKRKSNSSSVVKDRKKAIKKPEKK |
3 | 12 | 54 | KKRKSNSSSVVKDRKKAIKKPEKKTSSTKSPNRSKPDRKKAIK |
4 | 129 | 134 | RKRKEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 8e-34 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO98438 |