PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98077
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Nin-like
Protein Properties Length: 322aa    MW: 37212.5 Da    PI: 9.1739
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98077genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.69.2e-27203252352
    RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
               ++i ledl+kyF+lpi +A+++L+++lTvLKr+CR++GI+RWPhRkiksl
  OMO98077 203 ARIALEDLAKYFDLPIVEASRNLNIGLTVLKRKCREFGIPRWPHRKIKSL 252
               689*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MELSQTPSLT TLLVFENTIN KELIRTLHVY RLDNEEEHEV EREFVFRKGA PYVEMAATPL  60
LRLQGFRPQD LFEGRVLGLW LCVFAFHANR LPRFFSIPSL LSISRNPKLK SIPSLANDLQ  120
KISQRDCSAE ERGSSGESSK ETYTEVGHNH CQSKRSLPVL DQDLNCLPNS VATSEFLKSQ  180
QIEQSATGDA AKKRKRADSK DIARIALEDL AKYFDLPIVE ASRNLNIGLT VLKRKCREFG  240
IPRWPHRKIK SLDGLIRDLQ EEADKRQEED EAAAFAVEKR RMMLESERES IERDPYIELK  300
SETKRFRQDI FKRRHKARAL KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197AKKRKRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-83Nin-like family protein