PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO97447
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family TCP
Protein Properties Length: 378aa    MW: 41416.9 Da    PI: 8.2993
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO97447genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.64.5e-34511932133
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...........kaa 91 
                g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++   s+ +++ +           k a
  OMO97447  51 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFALNHQIILSTTSQEVAgasqsnkdqglK-A 150
               689*************************************************************88888777444444444433333222111234432.2 PP

       TCP  92 ksaa.kskksqksaasalnlakesrakarararertrekmrik 133
               +s + +      s +s++n ++  rak+++ ar+ t+ek +  
  OMO97447 151 SSVNwEDPAGGLSRSSFWNSDAFWRAKSKEVARDTTNEKDNSW 193
               2222233333444444566666666999999999888887654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MIASSKEADS PNRQEGNNTN DTKVSKNPSS STSTPWLRLK DPRIVRVSRA FGGKDRHSKV  60
CTIRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLPIPPGN  120
FALNHQIILS TTSQEVAGAS QSNKDQGLKA SSVNWEDPAG GLSRSSFWNS DAFWRAKSKE  180
VARDTTNEKD NSWNKRSDEE EKQEGNNTEG GATQQVSSDH SMLQRAAMLN NAMPFGSYYH  240
FEPSNFPILG SHGFASSSSH TEDLHNFNVV PLPSTLSLSS GSQILVCPPP PPAGATQPLF  300
PPHATANSLD NIDPRQHVNH FQMLSSGAQN LLPNSLNSPV AYSISQSMRP FPLSMSMTPP  360
PRLPHSHNSS GSHQPDKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-39TCP family protein