PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96753

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 454aa MW: 48962.2 Da PI: 8.1402

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96753	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.6	1.6e-18	63	162	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++e+ ++l+rg+l++ +Weev++++ +++++ +s +qCk+k++nl+kryk + ++ +++ + ss++ +f+q+e OMO96753 63 EWSDTAIACLLEAYTEKFNQLNRGNLRGRDWEEVAEAVsercgggggggggggEKQKMWKSVEQCKNKIDNLKKRYKVELQRISSG--GGSSSWHWFKQIE 161 5*************************************************9999******************99999997..77789****98 PP trihelix 87 a 87 a OMO96753 162 A 162 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MSSQDNLPLI DTHAPPTRHP SSPTETSATL GGDSGFLSNP DSEPETRRKK PRFEPEYRKD 60 REEWSDTAIA CLLEAYTEKF NQLNRGNLRG RDWEEVAEAV SERCGGGGGG GGGGGEKQKM 120 WKSVEQCKNK IDNLKKRYKV ELQRISSGGG SSSWHWFKQI EAVMGNSGSS SIGKALEGED 180 RNGGSSLGKQ ANKRYVPNNV ASGSNLKSKS IPSVKWRRVV FKISGTALSG NCQSIDPKIA 240 MQIAREIATA CRLGVQVAIV VGGRNFFCGD SWVSATGFDR PTAYQIGMMA SVMNSMLIQS 300 ALEKLGVQTR MQSAFVLPEV AEPYSRPRAI RHLEKGKVVI FGGIGAGTGN PLFTTDTAAA 360 LRATEINADV LLKGTNVDGV YDCHSDNGSA TLDHISFREV GSIGITSMDT MAITYCEENT 420 IPVVVFNLLE PGNISKALCG ERVGTLIDQE GRIS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MSSQDNLPLI DTHAPPTRHP SSPTETSATL GGDSGFLSNP DSEPETRRKK PRFEPEYRKD  60
REEWSDTAIA CLLEAYTEKF NQLNRGNLRG RDWEEVAEAV SERCGGGGGG GGGGGEKQKM  120
WKSVEQCKNK IDNLKKRYKV ELQRISSGGG SSSWHWFKQI EAVMGNSGSS SIGKALEGED  180
RNGGSSLGKQ ANKRYVPNNV ASGSNLKSKS IPSVKWRRVV FKISGTALSG NCQSIDPKIA  240
MQIAREIATA CRLGVQVAIV VGGRNFFCGD SWVSATGFDR PTAYQIGMMA SVMNSMLIQS  300
ALEKLGVQTR MQSAFVLPEV AEPYSRPRAI RHLEKGKVVI FGGIGAGTGN PLFTTDTAAA  360
LRATEINADV LLKGTNVDGV YDCHSDNGSA TLDHISFREV GSIGITSMDT MAITYCEENT  420
IPVVVFNLLE PGNISKALCG ERVGTLIDQE GRIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-172	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO96753